Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq96 161 1e-34 seq33 86.0 8e-12 >seq96 Length=723174 Score = 161 bits (178), Expect = 1e-34 Identities = 588/909 (65%), Gaps = 11/909 (1%) Strand=Plus/Plus Query 111105 TTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAA 111164 |||| || ||||| || ||||| | |||| || || ||||| || || | ||| | Sbjct 450612 TTCGTGCTGTCTCTACCGGATAGTAGGAGTTGTCGATCACGCGGTTCAGGTTGTAGGTTA 450671 Query 111165 CAATCTTT-GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACA 111223 | ||||| |||| |||| || || | ||||| || | |||||| || ||| Sbjct 450672 CT-TCTTTCGTGACCTCATAGAGCAATTTGTGGTCAAAGGTCTTCGCCTCTTCGTTCACA 450730 Query 111224 TACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTAC 111283 || ||||||||||| || ||||| ||||| || |||||||| || |||||| Sbjct 450731 AACCGCGGAAGGGCGATAGACGCCAAGTTGCAGACCGCCGTCTCCTCGGGGGACGTGTAC 450790 Query 111284 TCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTC 111343 || | ||||||||| |||| ||||| | |||||||| || | | ||||||||| | Sbjct 450791 TCAATAATTTCTGTGCATAGATTGGAGCATTTAATCGTGCCGATGTGCTTTTGGTTTGAC 450850 Query 111344 TTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTG 111403 ||| ||||||||||||| || || |||||| | || |||||||| |||| | | Sbjct 450851 TTCCTGTTGCACGCATCTTTATACAGCATGAAAGGAACACCCGTCTCAATCTGGGTCTCT 450910 Query 111404 AGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTC-CCTCCGCCTC 111462 | |||| ||| | || ||||| | | ||| ||| || | | || Sbjct 450911 AAGATAGTAAACCACAGCTCCTGCGCTGGGATCGT-GCGCACCCCCTTCTTTTGTGTTTC 450969 Query 111463 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCT 111521 ||| | || | || |||||||||||| ||| || ||| ||||| || | Sbjct 450970 GTAGCTCACATACAAGGATTCAAACTCCTC-TCCATAGCAATCGCTAAGACCCGGGCACA 451028 Query 111522 TGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTG 111581 ||| ||| | || | ||| || |||| | || ||||||||||| || || | Sbjct 451029 TGTGGGGATCCATTAGCGTCCAGCTTCCTTCTTCTTTTACACGCTTCATGAAGAGATCGG 451088 Query 111582 GAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 111641 | ||||| ||| | |||||||| | || || || | ||| || | Sbjct 451089 GTATCCAAAGGCCGTAGAAGAGATCCCGCGCACGTTGATCATCCTTACCCGTATTACGCT 451148 Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 111701 | | || ||||| | || || |||||||| ||||| |||||||| || | | | Sbjct 451149 TCAGCATCAGAAACTCGAAAATGTCAGCGTGCCAGGGCTCCAGATAGACCGCAAAGGCAC 451208 Query 111702 CCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 |||| || || ||| | |||| || ||||| || ||| ||| || ||||| |||| Sbjct 451209 CCTTGCGCTTACCGCCACCCTGATCAACGTAGCGGGCGGTGTTGTTGAACACGCGCAGCA 451268 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATT-TATTGGCTCTC 111817 | || | | ||| | || |||||||| || |||| || || | || | Sbjct 451269 TGGGCACGAGACCGTTGGAAGTCCCATTTGTGCCAGCAATA-TAGCTTCCAGAGGAACGG 451327 Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | | || | ||||| |||||| || || || |||| ||| || |||||| | Sbjct 451328 ATGTTGTGAACGTGCAGCCCAATCCCACCGGCTGACTTACTGATCACGGCGCACTCCTTC 451387 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | ||||| || | || |||||||| | || || || ||||| | | Sbjct 451388 AGGGTGTCGTAGATGCCCTCAATGCTATCCTCCTTCATAGCTATGAGAAAGCACGAGCTC 451447 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 || || || | ||| || ||||| |||||||| || ||||| ||||| |||| | || Sbjct 451448 ATTTGGGGCCGTGGCGTGCCAGCGTTGAAGAGCGTCGGTGTGGCGTGGGTGAAGAATCCC 451507 Query 111998 TGGGACATC 112006 | ||||||| Sbjct 451508 TTGGACATC 451516 >seq33 Length=1536331 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 145284 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 145343 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 156411 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 156470 Query 145344 GGTAGGA 145350 ||||||| Sbjct 156471 GGTAGGA 156477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031246361600