Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq96 196 6e-45 seq11 136 5e-27 >seq96 Length=723174 Score = 196 bits (216), Expect = 6e-45 Identities = 859/1337 (64%), Gaps = 48/1337 (4%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || ||||||| || | ||||||| ||||||||||| |||| |||||| | ||| ||| Sbjct 450212 TAAATATTGGATGTAAAAGGCTCAATACACTCATTGTTGCCCAGGATTTGCGATGTCGAG 450271 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || || ||||||||||||| || || ||| || | || ||| |||||| Sbjct 450272 GCAGTCGGCATGGGTGCCAACAGCAGAGAGTTGCGCATGCCTGAGGATTTAACGCGTTCT 450331 Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGA-GCT--TTGTCTCCCCCTGCCACATATCAAACTGG 118358 |||||||| ||||| || | | ||| | | || | | ||||| || ||||| Sbjct 450332 TTGAGAGCATCCCAATCCCACCGGCCGCTAGTGGGCTTCTTCCCCCACAGGTCGAACTGC 450391 Query 118359 AGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTC-ATATGGGCCCTCAACCTCCGC 118417 || ||||| || | || || | || | ||| ||| || || || ||| || Sbjct 450392 AGTATACCCTGAGCAGCAGG-GCTCTTGTTGAAGTCGGTATACGGCCCTTCCTTCTCAGC 450450 Query 118418 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT 118477 | || | | || | ||| || | ||| || |||||||| || | || | Sbjct 450451 AAGCTCCACGGAAGATTCCACGGCGGCATAATAGATAGTTTCAAAGATCTCTTCGTTAAG 450510 Query 118478 T-GCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGAC 118536 |||||| || | | || | | || | | |||||| ||| || || | Sbjct 450511 GCGCCTTGAT-TCAGGGCATGTGAATGTCTGACGTAAAAGAATAAAAGTATCTGCAAGGC 450569 Query 118537 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGG 118596 |||||| || | |||||| || |||| | | || | | || || ||||| || | Sbjct 450570 CTTGGATGCCCAAGCCAATGGGACGATAATTAGTGTTGCTCCTTCGTGCTGTCTCTACCG 450629 Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656 |||| | | ||||| || | || || || | ||| || | || |||| |||| Sbjct 450630 GATAGTAGGAGTTGTCGATCACGCGGTTCAGGTTGTAGGTTACTTCTTTCGTGACCTCAT 450689 Query 118657 GAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 118716 ||| || || ||||| | | |||||| || ||| || ||||||||||| | Sbjct 450690 AGAGCAATTTGTGGTCAAAGGTCTTCGCCTCTTCGTTCACAAACCGCGGAAGGGCGATAG 450749 Query 118717 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACA 118776 |||||| || || || | ||||| || |||||||| |||||||| ||||| | Sbjct 450750 ACGCCAAGTTGCAGACCGCCGTCTCCTCGGGGGACGTGTACTCAATAATTTCTGTGCATA 450809 Query 118777 AGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 118836 || || | ||||| ||||| | || |||||| |||||||| |||| |||||||| | Sbjct 450810 GATTGGAGCATTTAATCGTGCCGATGTGCTTTTGGTTTGACTTCCTGTTGCACGCATCTT 450869 Query 118837 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT 118896 | || |||||| | || |||||||| | |||| || | |||| ||| | | Sbjct 450870 TATACAGCATGAAAGGAACACCCGTCTCAATCTGGGTCTCTAAGATAGTAAACCACAGCT 450929 Query 118897 CGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCC-----TCGTACTTTGTGTAGAG 118951 | ||||| | ||| || | ||| |||| ||||| | || | Sbjct 450930 CCTGCGCTGGGATCGTGC-----GCACCCCCTTCTTTTGTGTTTCGTAGCTCACATACAA 450984 Query 118952 GGCTTCAAACTCTTCACCCACGGC---CTCTGAGAGCCCTGGTGCCTTATCTGGGCAG-- 119006 || ||||||||| || || | || | || ||| ||| || | || |||| | Sbjct 450985 GGATTCAAACTCCTCTCC-ATAGCAATCGCTAAGA-CCCGGGCAC---ATGTGGGGATCC 451039 Query 119007 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 119066 | || | ||| || | || | || |||||||||||||| || || ||||| || Sbjct 451040 ATTAGCGTCCAGCTTCCTTCTTCTTTTACACGCTTCATGAAGAGATCGGGTATCCAAAG- 451098 Query 119067 GCCG-AGAAGAGATCCCGACAGCGAGCTTCTTCATCC---CCCTGATTGAGACGCAACTC 119122 |||| ||||||||||||| || || |||||| ||| ||| | || | Sbjct 451099 GCCGTAGAAGAGATCCCGCGCACG---TTGATCATCCTTACCCGTATTACGCTTCAGCAT 451155 Query 119123 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG 119182 || ||| || | || || |||||||| || ||||| || ||||| | | ||||| || Sbjct 451156 CAGAAACTCGAAAATGTCAGCGTGCCAGGGCTCCAGATAGACCGCAAAGGCACCCTTGCG 451215 Query 119183 ---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAAT 119239 || ||| |||| | || || | || ||| ||| || || || ||||| || | Sbjct 451216 CTTACCGCCACCCTGATCAACGTAGCGGGCGGTGTTGTTGAACACGCGCAGCATGGGCAC 451275 Query 119240 GATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTT--ATTGGCTCTGACATCG 119297 || ||| | ||| |||||||| || |||| || ||| | || | || | | Sbjct 451276 GAGACCGTTGGAAGTCCCATTTGTGCCAGCAATAT-AG-CTTCCAGAGGAACGGATGTTG 451333 Query 119298 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 119357 || | ||||| ||||| || || || |||| ||| ||||||||| | || || Sbjct 451334 TGAACGTGCAGCCCAATCCCACCGGCTGACTTACTGATCACGGCGCACTCCTTCAGGGTG 451393 Query 119358 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA---CATT 119414 ||||||| || || || || |||| | || ||||| ||||| ||| |||| Sbjct 451394 TCGTAGATGCCCTCAATGCTATCCTCCTTCATAGCTATGAGAAAGCA---CGAGCTCATT 451450 Query 119415 TGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGG 119474 || |||| || || |||||||||||||| || ||||| |||||| |||| | || | | Sbjct 451451 TGGGGCCGTGGCGTGCCAGCGTTGAAGAGCGTCGGTGTGGCGTGGGTGAAGAATCCCTTG 451510 Query 119475 GACATCTTGTCGTAGGT 119491 |||||| || ||||| Sbjct 451511 GACATCAATTCATAGGT 451527 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/190 (71%), Gaps = 10/190 (5%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| ||||||||||| ||| | |||| || | |||||| || | Sbjct 449867 CGAAGGTAGTACATGCCCGTCTTGAGGCCCATTTCCCAGCAGTAGAAATGCATGGACGTT 449926 Query 117897 AA---CTTGGAG-AGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGAT 117952 | | |||| |||||| |||||||||||||||||| | |||||||| || || Sbjct 449927 ATGCGCCCGGAGGAGGGTT----TTTCCATGAAGAGGTTCAGAGACTGGGATTGGTCAAT 449982 Query 117953 GAAGCGTCCC-CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAG 118011 | | | |||| || || || ||||| | ||||| |||| | || ||||| |||| Sbjct 449983 GTA-CTTCCCACGGTCAGCGGCCATCTGAATCAGATCCCGCTGTGAAATCTCCCAGACAG 450041 Query 118012 TCCTGTAGAG 118021 || |||| || Sbjct 450042 TCTTGTAAAG 450051 >seq11 Length=2034363 Score = 136 bits (150), Expect = 5e-27 Identities = 353/530 (67%), Gaps = 16/530 (3%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || |||||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 1273473 ATACTCGCCAACCTTCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATCTCCAT 1273414 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCC--AATCTGTTTGAGGAGA 129844 || || ||||| ||| ||||| | |||| |||| || | ||| || Sbjct 1273413 GAAGTCGAATGGATTCGCCGAGTTGTAG--TGCTTCTCCTCCCCAAGCGCAACGAGCAGG 1273356 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 || |||| || |||| ||||||| |||| ||| |||||||| ||||| || Sbjct 1273355 CGGTCCGCAACAAACTCGATGTACTGCCCCATCAGCTCCGAGTTCATCCCGATCAGCCGC 1273296 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 ||| || ||||| |||||||| | | ||| |||||||| || ||| | ||| | Sbjct 1273295 ACTGGCAGTGCGTCGCAGATGAACTCGTGCTCGATGTCCACCGCATCCGTGATGATCTCC 1273236 Query 129965 TGAATGGTCT-CCGTGCCAGGTCTATTGCGCAAAGT----CTTGAAGAGTTC-CACGGCA 130018 | | | | ||| | ||| || ||| || || | || | || |||| || Sbjct 1273235 AGCACGCGCGACCGCGGCAG--CTTGTGCTTAATGTGGCGCGTGTACAGCAGGCACG-CA 1273179 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || ||| ||| || |||||||| || ||||| || || || |||| || || ||| Sbjct 1273178 AAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTTAGCCCGGGC 1273119 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 || | || |||||||| | |||||| | || |||||||| || || |||||||| ||| Sbjct 1273118 ATCACGCCGCGCTTCTTAAGCCAGAACAGTGCGCAAAATGACCCTGAAAAGAAGATGCCC 1273059 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCAC 130198 || ||| || ||||| | |||||||| ||| | | || | | | |||| Sbjct 1273058 TCGACAGCTGCAAACGCGACCAGACGCTCCTGGAAG---CTGACCTCGCTCCCGATCCAC 1273002 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 || ||||||| ||||| || | ||| || || | ||||||||||| Sbjct 1273001 CGCACCGCCCACGCAGCCTTCTTTTGGATGCATGGAATCGTCTGGATCGC 1272952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434457877760