Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq96 197 2e-45 seq11 161 1e-34 >seq96 Length=723174 Score = 197 bits (218), Expect = 2e-45 Identities = 1080/1692 (64%), Gaps = 104/1692 (6%) Strand=Plus/Plus Query 78180 CTTGGCGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAG 78239 || |||||||| || | |||||||||||||||||||| ||| | | ||| | ||| | Sbjct 449856 CTGGGCGCGTG--CGAAGGTAGTACATGCCCGTCTTGAGGCCCATTTCCCAGCAGTAGAA 449913 Query 78240 GTGCATACTCGACA-GCTTGGCCAGACTCGGGTTCT-CCATGAAGATGTTGAGCGACTGG 78297 ||||| || | || | || || ||||| | ||||||||| ||| || |||||| Sbjct 449914 ATGCATGGACGTTATGC--GCCCGGAGGAGGGTTTTTCCATGAAGAGGTTCAGAGACTGG 449971 Query 78298 GACTGGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATC 78357 || ||||| |||||| || ||||| || ||||| | || | | || | |||| Sbjct 449972 GATTGGTCAATGTACTTCCCACGGTCAGCGGCCATCTGAATCAGATCCCGCTGTGAAATC 450031 Query 78358 TCCCAGATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTC---CAGCGCTTGTACG 78414 ||||||| ||| ||||| ||||| || || || | ||| | || | ||| | Sbjct 450032 TCCCAGACAGTCTTGTAAAGAGCCTTGAGGTCCTCATCAATGCCTTTCACAGGTTGAA-- 450089 Query 78415 CTCCCACCGGC---TCGCACAATTTCATTCTTAATTTGAGGGTTCCAG------CGATTG 78465 | |||| | | ||| ||||| ||| | ||||| || | | Sbjct 450090 -TAGAACCGTTAAATGTAATAATCTCATTACGAATGGTATCATTCCACATCCCACGCTCG 450148 Query 78466 ATCTTCTGAAGATCCCGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTC 78525 ||| ||||| || ||||||| | ||| | | | |||||| || || Sbjct 450149 ATC------AGATCACGCACCAGGTACTTGTTCAAGACGGGGAACTCTCCACTTAGAACA 450202 Query 78526 CGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGG 78585 || |||| ||| || |||| || | ||||| | | ||| ||||| |||| ||| || Sbjct 450203 CGACGCACGTAAATATTGGATGTAAAAGGCTCAATACACTCATTGTTGCCCAGGATTTGC 450262 Query 78586 GCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTG 78645 | |||||||| |||||||||||||| | ||| ||||| || || | || || | || Sbjct 450263 GATGTCGAGGCAGTCGGCATGGGTGCCAACAGCAGAGAGTTGCGCATGCC-TGAGGATTT 450321 Query 78646 ATCTCGACCTTT-AGGCCGTCCCAAAATTCATTCGCCGCGA----------TCCCCCACA 78694 | | || |||| || | |||||| || ||||| | ||||||||| Sbjct 450322 AACGCGTTCTTTGAGAGCATCCCAATCC-CACCGGCCGCTAGTGGGCTTCTTCCCCCACA 450380 Query 78695 TGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCG-TAAGATCCC 78753 ||| || || ||||||| | || || | ||||| ||| || | || Sbjct 450381 GGTCGAACTGCAGTATACCCTGAGCAGCAGGGCTCTTGTTGAA-GTCGGTATACGGCCCT 450439 Query 78754 TCCTCCTTGGCGAGTTC---GCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAG 78810 |||| || || || || | | || || || ||| || | || | || || ||| Sbjct 450440 TCCTTCTCAGCAAGCTCCACGGAAGATTC---CACGGCGGCATAATAGATAGTTTCAAAG 450496 Query 78811 ATGCCCTTGTTGAGCTCGCGCGCCTTGGT-CTCGTCGAACGAAAGGCCGAGCATCATGAA 78869 || | | ||| || |||||||| | | | | ||| | | || | ||| Sbjct 450497 ATCTCTTCGTTAAG-----GCGCCTTGATTCAGGGCATGTGAATGTCTGACGTAAAAGAA 450551 Query 78870 GACA----TCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCT 78925 | | || || ||||| |||| ||| | | || || || | |||||||| Sbjct 450552 TAAAAGTATCTGCAAGGCCTTGGATGCCCAAGCCAATGGGACGATAATTAGTGTTGCTCC 450611 Query 78926 TTCGGGCCGCCTCGGTCGG---GTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCG 78982 |||| || | ||| ||| ||| |||| ||||| |||||||||||||| | Sbjct 450612 TTCGTGCTGTCTCTACCGGATAGTAGGAGTTG---TCGATCACGCGGTTCAGGTTGTAGG 450668 Query 78983 TGACGACCCGAGTCACCTCGTA---CAATTTGGCGAAATCAAAATGATTT-CCT-----T 79033 | || | || ||||| || ||||||| | ||||| || ||| | Sbjct 450669 TTACTTCTTTCGTGACCTCATAGAGCAATTTGTGG---TCAAAGGTCTTCGCCTCTTCGT 450725 Query 79034 TGATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAG 79093 | | || ||| ||| | || |||| |||||| || |||||||| || ||| | Sbjct 450726 TCACAAACCGCGGAAGGGCGATAGACGCCAAGTTGCAGACCGCCGTCTCCTCGGGGGACG 450785 Query 79094 AAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGT 79153 ||| || ||||||||||| | ||| || | || || |||||||||| ||| |||| Sbjct 450786 TGTACTCAATAATTTCTGTGCATAGATTGGAGCATTTAATCGTGCCGATGTGCTTTTGGT 450845 Query 79154 TGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGAC 79213 | |||| ||| || || || || || |||| | || || ||||||| ||| Sbjct 450846 TTGACTTCCTGTTGCACGCATCTTTATACAGCATGAAAGGAACACCCGTCTCAATCTGGG 450905 Query 79214 TCT-TGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCT-- 79270 ||| | ||| | || | | ||| | || ||| | | | | ||| |||| Sbjct 450906 TCTCTAAGATAGTAAACC-ACAGCTCCTGCGCTGGGAT--CGTGC--GCACC--CCCTTC 450958 Query 79271 ----GTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGG 79326 ||| |||| || ||||| | || |||| |||||| |||| || Sbjct 450959 TTTTGTGTTTCGTAGCTCACATACAAGGATTCAAACTCCTCTCCATAGCAATCGCTAAGA 451018 Query 79327 CCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCA-ACCTTCTCCAT 79385 ||||||||| ||| || ||| || |||| | || | ||||| || || ||| Sbjct 451019 CCCGGGCACATGTGGGGATCCATTAGCGTCCAG-CTTCCTTCTTCTTTTACACGCTTCAT 451077 Query 79386 GAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCTCCTCGTCGC 79444 |||||| || || ||||| ||| |||| |||||| || || ||| || || | | Sbjct 451078 GAAGAGATCGGGTATCCAAAGG-CCGTAGAAGAGATCCCGCGCACGTTGATCATCCTTAC 451136 Query 79445 CCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGA 79504 || || | |||| ||||| || | ||||| |||||||| ||||||||||||| Sbjct 451137 CCGTATTACGCTTCAGCATCAGAAACTCGAAAATGTCAGCGTGCCAGGGCTCCAGATAGA 451196 Query 79505 TGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGA 79564 || || | |||||||||||| ||||| ||||| | ||||| ||||| |||||||||| Sbjct 451197 CCGCAAAGGCACCCTTGCGCTTACCGCCACCCTGATCAACGTAGCGGGCGGTGTTGTTGA 451256 Query 79565 AAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTAC 79624 | || || ||||||||||||| |||| || || || || || || | | Sbjct 451257 ACACGCGCAGCATGGGCACGAGACCGTTGGAAGTCCCATTTGTGCCAGCAATATAGCTTC 451316 Query 79625 CGCTCGCCCGAATGTT-CGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGC 79683 | | || ||||| || | ||| | || || || |||| |||| ||| Sbjct 451317 CAGAGGAACGGATGTTGTGAAC-GTGCAGCCCAATCCCACCGGCTGACTTACTGATCACG 451375 Query 79684 GCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGG 79743 ||||||||||| || || |||||||||||||| || || ||||||||||| | || Sbjct 451376 GCGCACTCCTTCAGGGTGTCGTAGATGCCCTCAATGCTATCCTCCTTCATAGCTATGAGA 451435 Query 79744 AAGC---AGCTCGACATCTGTGGGTTGT-TCGTACCGGCGTTGAAGAGGGTCGGCGTCGC 79799 |||| |||| ||| || ||| || ||| || ||||||||||| ||||| || || Sbjct 451436 AAGCACGAGCT---CATTTG-GGGCCGTGGCGTGCCAGCGTTGAAGAGCGTCGGTGTGGC 451491 Query 79800 GTGCGTGAAGAA 79811 ||| |||||||| Sbjct 451492 GTGGGTGAAGAA 451503 Score = 170 bits (188), Expect = 2e-37 Identities = 306/438 (70%), Gaps = 12/438 (3%) Strand=Plus/Minus Query 19193 TTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA-ACAACCCGCAGATG-- 19249 |||||||| ||||| || ||||| || |||||||| || ||| || ||| || ||| Sbjct 451503 TTCTTCACCCACGCCACACCGACGCTCTTCAACGCTGGCACGCCACGGCCC-CAAATGAG 451445 Query 19250 -TCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCT 19308 ||| ||| | || ||| |||||||||| || |||||||||||||||||||| || || Sbjct 451444 CTCGTGCTTTCTCATAG---CTATGAAGGAGGATAGCATTGAGGGCATCTACGACACCCT 451388 Query 19309 CAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCACTGCTCG-AATA 19367 ||||||||||| ||| |||| |||| || || ||| | ||| | || || | Sbjct 451387 GAAGGAGTGCGCCGTGATCAGTAAGTCAGCCGGTGGGATTGGGCTGCAC-GTTCACAACA 451329 Query 19368 TCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAA 19427 |||| || ||| | || ||| || || || || ||||| |||| || | Sbjct 451328 TCCGTTCCTCTGGAAGCTATATTGCTGGCACAAATGGGACTTCCAACGGTCTCGTGCCCA 451269 Query 19428 TGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGG 19487 |||| ||||| ||||||||||| ||| | ||||| | ||||| ||||| || ||||||| Sbjct 451268 TGCTGCGCGTGTTCAACAACACCGCCCGCTACGTTGATCAGGGTGGCGGTAAGCGCAAGG 451209 Query 19488 GCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGC 19547 | | || || |||| || ||||| |||||||| ||| | | || || || ||| Sbjct 451208 GTGCCTTTGCGGTCTATCTGGAGCCCTGGCACGCTGACATTTTCGAGTTTCTGATGCTGA 451149 Query 19548 GCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC-ACGGCCTTGTGGATT 19606 | || |||| | || || || || || |||||| |||||||| ||||| Sbjct 451148 AGCGTAATACGGGTAAGGATGATCAACGTGCGCGGGATCTCTTCTACGGCCTT-TGGATA 451090 Query 19607 CCGGACCTATTCATGGAG 19624 || || || |||||| || Sbjct 451089 CCCGATCTCTTCATGAAG 451072 Score = 107 bits (118), Expect = 2e-18 Identities = 294/448 (66%), Gaps = 7/448 (2%) Strand=Plus/Minus Query 20375 CGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAAC 20434 |||||||| |||| | || ||||||||||| |||||||| | || ||| |||| ||| Sbjct 450306 CGCAACTCTCTGCTGTTGGCACCCATGCCGACTGCCTCGACATCGCAAATCCTGGGCAAC 450247 Query 20435 AACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAG 20494 || ||| | | ||||| | || |||| || ||| |||||||| || || ||| Sbjct 450246 AATGAGTGTATTGAGCCTTTTACATCCAATATTTACGTGCGTCGTGTTCTAAGTGGAGAG 450187 Query 20495 TTCGTCATGGTAAACAAGCACCTGGTCCGCGACTTGCAGAAGATCGATATGTGGTCGCCC 20554 ||| | | | |||||| ||||||| || || || || | |||||| Sbjct 450186 TTCCCCGTCTTGAACAAGTACCTGGTGCGTGATCTGATCGAGCGTGGGATGTGGAATGAT 450127 Query 20555 AAAATTAAGAATGAAATTGTCCGAGCCGGCGGGAGCGTCCAGGCATTGGAT---ATCCCC 20611 | ||| ||||| ||| | | ||| | || | || | || Sbjct 450126 ACCATTCGTAATGAGATTATTACATTTAACGGTTCTATTCAACCTGTGAAAGGCATTGAT 450067 Query 20612 CAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGAC 20671 || ||||||||| |||||| ||| || ||||| || ||||| | | || | Sbjct 450066 GAGGACCTCAAGGCTCTTTACAAGACTGTCTGGGAGATTTCACAGCGGGATCTGATTCAG 450007 Query 20672 ATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAG 20731 ||||| || || || || ||||| ||||| |||||||| || || |||||||||| Sbjct 450006 ATGGCCGCTGACCGTGGGAAGTACATTGACCAATCCCAGTCTCTGAACCTCTTCATGGAA 449947 Query 20732 AATCCGAGC--CTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCA 20789 || || | | |||| | | | ||||||||| | ||| ||||| | | ||| |||| Sbjct 449946 AAACCCTCCTCCGGGCGCA--TAACGTCCATGCATTTCTACTGCTGGGAAATGGGCCTCA 449889 Query 20790 AGACGGGCATGTACTATCTGCGGACCCG 20817 |||||||||||||||| || || || || Sbjct 449888 AGACGGGCATGTACTACCTTCGCACGCG 449861 >seq11 Length=2034363 Score = 161 bits (178), Expect = 1e-34 Identities = 550/833 (66%), Gaps = 57/833 (7%) Strand=Plus/Plus Query 59617 TCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATT 59676 ||||| | || |||||||| ||||| | | | ||| || |||||||| ||||| || Sbjct 1272668 TCTGGACGGTGGAGGAGATCGACCTGGGCAGTGACATGGTGGATTGGGTGAAGCTGAACG 1272727 Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736 | | |||| || ||||||||| || || ||||||||||||| || || || || | Sbjct 1272728 ATGGGGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCGGGAAGCGACGGCATCG 1272787 Query 59737 TGATGGAAAATATAG-ACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 |||| || || | | ||| | ||| | || || |||| | ||||| || || Sbjct 1272788 TGATCGAGAACCTCGCACA-GCGCTTCATGACCGACGTGAAGATACCGGAGGCGCGTGCG 1272846 Query 59796 TTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATC 59855 ||||| | || |||| | | | ||| ||||||||| ||| |||||||| | ||| | Sbjct 1272847 TTCTATGGGTTTCAGCTGATGATGGAGAATATCCACTCGGAGGCGTACTCGGTGATGCTG 1272906 Query 59856 GATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TC 59914 || | | ||| ||| | || || ||| | || | | ||| || ||||| | Sbjct 1272907 GACACATACATCATGGACACTGAGGAAAAGCTCCGCATGCTACATGCGATCCAGACGATT 1272966 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGC---ATC 59971 || ||| | || | || || | ||||| ||| |||||| | ||||| || Sbjct 1272967 CCATGCA-TCCAAAAGAAGGCTGCGTGGGCGGTGCGGTGGAT-----CGGGAGCGAGGTC 1273020 Query 59972 A-TTTGCA-CAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCG 60029 | || || | ||||| | || |||||| || || || |||||||| || || || Sbjct 1273021 AGCTTCCAGGAGCGTCTGGTCGCGTTTGCAGCTGTCGAGGGCATCTTCTTTTCAGGGTCA 1273080 Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 || || || | |||||||| || ||||| ||| | ||||| || || | ||| |||| Sbjct 1273081 TTTTGCGCACTGTTCTGGCTTAAGAAGCGCGGCGTGATGCCCGGGCTAACCTTCAGCAAC 1273140 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACA 60148 |||||||| || || ||||||||||| || ||| ||||| ||| | ||| || | | Sbjct 1273141 GAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGC-GTGCCTGCTGTACACGCG 1273199 Query 60149 CC-TATT--GGA-AAAATGCC---------CTTCCAAGGATATTCACAAGATTGTTCAGT 60195 || ||| | | || |||| | | | ||| || || | || | || Sbjct 1273200 CCACATTAAGCACAAGCTGCCGCGGTCGCGCGTGC-TGGAGATCATCACGGATG--CGGT 1273256 Query 60196 GGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCA-TGCAAACTCATAGGT 60254 | || | ||| |||||||||| || || || ||| ||| || || || Sbjct 1273257 G-------GACATCGAGCACGAGTTCATCTGCGACGCACTGCCAGTGC-GGCTGATCGGG 1273308 Query 60255 ATGGACGCTGGAG-AAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGC 60310 ||| || | |||| ||| ||||||||| ||||||| ||||||||| ||| | || Sbjct 1273309 ATGAACTC-GGAGCTGATGGGGCAGTACATCGAGTTTGTTGCGGACCGCCTGCTCGTTGC 1273367 Query 60311 CC--AGTTTGGAGAAGGAC--CAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGA 60366 | | ||||||| || ||| | ||||| || || ||||||| ||||||| Sbjct 1273368 GCTTGGGGAGGAGAAGCACTACAACT--CGGCG-----AATCCATTCGACTTCATGGAGA 1273420 Query 60367 CCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 |||||| || | || |||||||||||||| |||||| ||| || || ||| Sbjct 1273421 TGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGAAGGTTGGCGAGTAT 1273473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524141770240