Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq96 152 6e-32 seq2 96.9 4e-15 >seq96 Length=723174 Score = 152 bits (168), Expect = 6e-32 Identities = 299/433 (69%), Gaps = 12/433 (3%) Strand=Plus/Minus Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAG 53331 ||| || |||||||| || || || ||||||||||| ||| | || || ||| || Sbjct 451501 CTTCACCCACGCCACACCGACGCTCTTCAACGCTGGCACGCCACGGCCCCAAATG---AG 451445 Query 53332 CT---GCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAA 53388 || |||| || | || |||||||| || || || ||||||||||| || || || Sbjct 451444 CTCGTGCTTTCTCATAGCTATGAAGGAGGATAGCATTGAGGGCATCTACGACACCCTGAA 451385 Query 53389 GGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCG-AACGTCC 53447 |||||| ||| ||| |||| | ||||| || || | ||| | || ||| ||| Sbjct 451384 GGAGTGCGCCGTGATCAGTAAGTCAGCCGGTGGGATTGGGCTGCAC-GTTCACAACATCC 451326 Query 53448 GTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGC 53507 || | || | || || || || || || | || ||||||| |||| Sbjct 451325 GTTCCTCTGGAAGCTATATTGCTGGCACAAATGGGACTTCCAACGGTCTCGTGCCCATGC 451266 Query 53508 TCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGT 53567 | ||||| ||||||||||| ||||| ||||| | |||||||| || ||||||||||| Sbjct 451265 TGCGCGTGTTCAACAACACCGCCCGCTACGTTGATCAGGGTGGCGGTAAGCGCAAGGGTG 451206 Query 53568 CGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTC 53627 | || || |||| || ||||| |||||||| |||||| | |||||||| |||| | Sbjct 451205 CCTTTGCGGTCTATCTGGAGCCCTGGCACGCTGACATTTTCGAGTTTCTGATGCTGAAGC 451146 Query 53628 TGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-TACAGCTCTGTGGATTCC 53685 ||| |||| | || || || ||| || || || || ||| || || ||||| || Sbjct 451145 GTAATACGGGTAAGGATGATCAACG-TGCGCGGGATCTCTTCTACGGC-CTTTGGATACC 451088 Query 53686 GGACCTCTTCATG 53698 || ||||||||| Sbjct 451087 CGATCTCTTCATG 451075 Score = 127 bits (140), Expect = 2e-24 Identities = 151/203 (74%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGT 55786 ||||||| ||||| ||| || ||||||||| ||||| | ||||||| | ||| Sbjct 450060 CTCAAGGCTCTTTACAAGACTGTCTGGGAGATTTCACAGCGGGATCTGATTCAGATGGCC 450001 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 ||||| ||||| |||||| ||||| ||||||||||||||| |||||||||| || || Sbjct 450000 GCTGACCGTGGGAAGTACATTGACCAATCCCAGTCTCTGAACCTCTTCATGGAAAAACCC 449941 Query 55847 TC--ACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 || | ||| | | | || ||||| || ||| | ||| | | ||| |||||||||| Sbjct 449940 TCCTCCGGGCGCA--TAACGTCCATGCATTTCTACTGCTGGGAAATGGGCCTCAAGACGG 449883 Query 55905 GTATGTACTATCTGCGGACCCGC 55927 | |||||||| || || || ||| Sbjct 449882 GCATGTACTACCTTCGCACGCGC 449860 >seq2 Length=630681 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 124710 GACTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTT 124769 ||||||||||| || | ||||||| |||| || || || |||| || ||| |||||||| Sbjct 316573 GACTCGTGGTTAAATAAAATGCCATTACATGCGAAAATGCCGTGCGCCTCCCGGTAGTTG 316514 Query 124770 TTCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGG 124829 |||||||| || || | ||||| | ||| ||||||| || || |||||||| || Sbjct 316513 ACAGTCATCCAGTATGCATACAGCTTCGCCACAGCATAGGGACTGCGTGGGTAGAACGGT 316454 Query 124830 GTGTTTTCATTTTGGGTAGGTTGCTGAATCTTCCCA 124865 || |||| |||| | || |||| |||| ||| Sbjct 316453 GTTCTTTCGGACTGGGGAATTTCCTGAGTCTTTCCA 316418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215343340800