Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq88 152 6e-32 seq44 150 2e-31 seq11 122 1e-22 seq96 89.7 6e-13 >seq88 Length=784127 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || |||||||| || | || ||||| ||| | | Sbjct 682297 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGCCAGC 682356 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 682357 GACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 682416 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| || ||||| | || || || || ||||| || Sbjct 682417 CAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 682476 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || || |||| || ||||| || Sbjct 682477 ATCCAGAAGGAGTCGACGCTTCACCTGGTGCTGCGCCTCCGCGGCGG 682523 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || |||||||| || | || ||||| ||| | | Sbjct 682802 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGCCAGC 682861 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 682862 GACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 682921 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| || ||||| | || || || || ||||| || Sbjct 682922 CAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 682981 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || |||| || ||||| || Sbjct 682982 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTCCGCGGCGG 683028 >seq44 Length=1445935 Score = 150 bits (166), Expect = 2e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || |||||||| || |||||||| || | || ||||| ||| | | Sbjct 1050205 AATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGCCAG 1050146 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || ||||||| || || |||||||||||||| || || || ||||| Sbjct 1050145 CGACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1050086 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || ||||| || ||||| || ||||| | || || || || ||||| || Sbjct 1050085 GCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 1050026 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTT 27640 |||| ||||| || || || || || || |||| || ||||| || ||| || Sbjct 1050025 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTCCGCGGCGGCTAAGCTT 1049970 >seq11 Length=2034363 Score = 122 bits (134), Expect = 1e-22 Identities = 302/450 (67%), Gaps = 19/450 (4%) Strand=Plus/Plus Query 64715 AGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTA 64774 ||||||| | || ||||| ||| || || || |||||||| |||||||| || | Sbjct 1273031 AGCGTCTGGTCGCGTTTGCAGCTGTCGAGGGCATCTTCTTTTCAGGGTCATTTTGCGCAC 1273090 Query 64775 TTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834 | |||||||| || ||||| ||| ||||||| || || | || ||||||||||||| Sbjct 1273091 TGTTCTGGCTTAAGAAGCGCGGCGTGATGCCCGGGCTAACCTTCAGCAACGAGCTGATCT 1273150 Query 64835 CTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTCA---GCCACCTCAA 64889 | || |||||||| || ||| || |||||| | || |||| || ||||| | || Sbjct 1273151 CGCGCGACGAGGGCCTGCACACGGACTTTGCG--TGCCTGCTGTACACGCGCCACATTAA 1273208 Query 64890 GGACAAACCATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAA 64949 | |||| | | | | | | || || | | || || || || || | Sbjct 1273209 GCACAAGCTGCCGCGGTCGCGCGTGCTGGAGATCATCACGGATGCGGTGGACATCGAGCA 1273268 Query 64950 GGAATTCATTACTGC--CGCGCTTCC-GTGTCGTCTCATCGGCATGGATGCCGATAAGAT 65006 || ||||| |||| ||| || || ||| || || ||||| ||| | | || ||| Sbjct 1273269 CGAGTTCAT--CTGCGACGCACTGCCAGTG-CGGCTGATCGGGATGAACTCGGAGCTGAT 1273325 Query 65007 GAAACAGTATATCGAATTTGTAGCAGATCGCCTGCTTACTCAGTTTGG---TATTAAGCC 65063 | ||||| ||||| ||||| || || |||||||| | | |||| |||| Sbjct 1273326 GGGGCAGTACATCGAGTTTGTTGCGGACCGCCTGCTCGTTGCGCTTGGGGAGGAGAAGCA 1273385 Query 65064 CTACTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGAC 65123 |||| || || | |||||||| |||| ||||||| |||| ||| |||| ||||| Sbjct 1273386 CTAC---AACTCGGCGAATCCATTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGAC 1273442 Query 65124 TAACTTTTTTGAAAAGAGGGTAGGTGATTA 65153 ||||| || || |||| ||| || || || Sbjct 1273443 CAACTTCTTCGAGAAGAAGGTTGGCGAGTA 1273472 >seq96 Length=723174 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094 ||||| || || |||||||||||||||||||||||| | | ||||| ||| | ||||| Sbjct 449861 CGCGTGCGAAGGTAGTACATGCCCGTCTTGAGGCCCATTTCCCAGCAGTAGAAATGCATG 449920 Query 80095 GAACTGA-GCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACA 80153 || | | || | || | ||| || |||||||||| |||||||||||| || || Sbjct 449921 GACGTTATGCGCCCGGAG-GAGGGTTTTTCCATGAAGAGGTTCAGAGACTGGGATTGGTC 449979 Query 80154 GATGAAAGCCCCACGATCTGCCGCCATTTCAAT 80186 ||| | |||||| || || ||||| | ||| Sbjct 449980 AATGTACTTCCCACGGTCAGCGGCCATCTGAAT 450012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309715627520