Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq88 96.9 2e-15 seq44 96.9 2e-15 >seq88 Length=784127 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | || |||| ||||| || || || |||||| || ||||| || || | Sbjct 682525 CGCCGCCGCGGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 682466 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || | || || || || || || ||||| || | |||||| |||||||||| Sbjct 682465 CGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCG 682406 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || | || ||| || || ||||| | |||| Sbjct 682405 GGATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCC 682347 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | | ||||| || || || | ||| ||||| || |||||||| Sbjct 682346 ACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682297 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | || |||| ||||| || || || |||||| || ||||| || || | Sbjct 683030 CGCCGCCGCGGAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 682971 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || | || || || || || || ||||| || | |||||| |||||||||| Sbjct 682970 CGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCG 682911 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || | || ||| || || ||||| | |||| Sbjct 682910 GGATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCC 682852 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | | ||||| || || || | ||| ||||| || |||||||| Sbjct 682851 ACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682802 >seq44 Length=1445935 Score = 96.9 bits (106), Expect = 2e-15 Identities = 168/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 34466 ATATCCAATCGTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAA 34525 ||| | || | | |||||| | || |||| ||||| || || || |||||| || | Sbjct 1049964 ATAACAAAGCTTAGCCGCCGCGGAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGA 1050023 Query 34526 TGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCT 34585 |||| || || | || || || | || || || || || || ||||| || | ||||| Sbjct 1050024 TGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCT 1050083 Query 34586 GTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTG 34644 | ||||||||||| | ||||||||||| |||| || | || ||| || || ||| Sbjct 1050084 GCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTATCGATCGTG 1050142 Query 34645 TCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGC 34704 || | |||||| || | | ||||| || || || | ||| ||||| || |||||| Sbjct 1050143 TCGCTGGCCTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGC 1050202 Query 34705 AT 34706 || Sbjct 1050203 AT 1050204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729231766368