Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq11 136 3e-27 >seq11 Length=2034363 Score = 136 bits (150), Expect = 3e-27 Identities = 389/599 (65%), Gaps = 14/599 (2%) Strand=Plus/Minus Query 29646 TCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTC 29705 |||||| | | ||||||| ||||| || ||||| || ||||||||||| | ||||| Sbjct 206611 TCAGCGCTGCAACGTGGTTTTTGTAGATATGCGCATCCCCGAGGGTGTGGACGAGCTCTC 206552 Query 29706 CCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 29765 | || | || ||| || | | || |||| || | || | |||| |||||||| Sbjct 206551 CGGGCTTTAACCCCGTCGCCTTCGCGATCAGAATTGTCAAAAGGGCGTAGGAGGCGATGT 206492 Query 29766 TAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCT-CT 29824 |||| ||||| || || ||||| || | || | |||||||||| |||||||||| || Sbjct 206491 TAAAAGGCACGCCAAGTCCCATATCGCAGGAGCGCTGGTAGAGCATACACGAGAGCTCCT 206432 Query 29825 CCGTCGC-----TCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGAC 29879 |||||| ||||||| ||||| | | |||||| || || || ||||| | Sbjct 206431 TCGTCGCCGGGTTCACGTAGAACTGTCCGAGAAGATGGCAGGGCGGGAGTGCCATTTTAT 206372 Query 29880 CCAAGTCTTTGGGGTTCCAGGCACAC-ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTG 29938 || | || ||||| || ||| | || || |||| ||| | ||| || || || Sbjct 206371 GCAGAGCGGACGGATTCCACGC-CACGAAGAGCATCCGCCGGTCGTTTGGATTTGTCTTG 206313 Query 29939 ATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNN 29998 | | |||||| || | | ||| ||||| ||| |||| ||||| | Sbjct 206312 AGGGTCTCCACGATGTACTTGATCTGGTCCACGCCCTTCCCGTCGTAGTTCGCGCGGTGG 206253 Query 29999 NNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC--TC 30056 ||||||||| |||||| || ||||| ||||| || || || || Sbjct 206252 TTCGTGTACTCCGCACCGAAATGCCGCCACTGAAAGCCGTAAACCGGGCCGAGATCCATC 206193 Query 30057 -CCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCC 30115 |||| | | |||| || || | |||| | ||| | | ||| |||||| | ||| Sbjct 206192 TCCTCGTTCTCGTGC---AATCCGCGGCTGTCAAGAAAAGCGCGGGAGCCGTTGTCATCC 206136 Query 30116 CAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCAC 30175 ||||| | ||||| || ||| ||| | |||||| || | | |||||| Sbjct 206135 CAGATATGAACCCCTTTATCGCTTAGCAGCCGTGCGTTTGTCTCGCCGCGCAAAAACCAC 206076 Query 30176 AGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTG 30234 ||||||||||| || | ||||||||| | ||||| ||||| | ||||| ||| Sbjct 206075 AGCAGCTCCTCGGAAACACCACGCCAAAAGACGCGTTTGGTGGTGAGCAAGGGAAGCTG 206017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406162724789056