Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq44 188 1e-42 seq88 185 2e-41 seq11 109 1e-18 seq14 95.1 3e-14 seq2 91.5 3e-13 >seq44 Length=1445935 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || ||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 1049978 CCGCCGCGGAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 1050037 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || |||||||||| ||| || ||||| ||| Sbjct 1050038 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGG 1050097 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| ||||||| ||||| || || || Sbjct 1050098 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACC 1050157 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101 ||||| | ||||||||| ||||||| ||||| ||||| |||||||||| Sbjct 1050158 TCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATTT 1050206 >seq88 Length=784127 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || ||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 682523 CCGCCGCGGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 682464 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || |||||||||| ||| || ||||| ||| Sbjct 682463 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGG 682404 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| ||||||| ||||| || || || Sbjct 682403 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACC 682344 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| | ||||||||| ||||||| ||||| ||||| |||||||| Sbjct 682343 TCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682297 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || ||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 683028 CCGCCGCGGAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 682969 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || |||||||||| ||| || ||||| ||| Sbjct 682968 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGGG 682909 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| ||||||| ||||| || || || Sbjct 682908 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCGCTGGCCTCCACC 682849 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| | ||||||||| ||||||| ||||| ||||| |||||||| Sbjct 682848 TCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682802 >seq11 Length=2034363 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || ||||| ||||| | || || |||||| Sbjct 1273270 GAGTTCATCTGCGACGCACTGCCAGTGCGGCTGATCGGGATGAACTCGGAGCTGATGGGG 1273329 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| || || || || || | |||| ||||| ||| | ||||| || Sbjct 1273330 CAGTACATCGAGTTTGTTGCGGACCGCCTGCTCGTTGCGCTTGGGGAGGAGAAGCACTAC 1273389 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||||| ||| || |||| || |||||| | || || || ||||| || || |||||| Sbjct 1273390 AACTCGGCGAATCCATTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACCAACTTC 1273449 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 ||||| ||| || |||| ||||| | | | ||||| Sbjct 1273450 TTCGAGAAGAAGGTTGGCGAGTATCAGAAGGCTGGTGT 1273487 >seq14 Length=217688 Score = 95.1 bits (104), Expect = 3e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 273774 AGTTTCGTGAAAATGTACCT-GGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 || |||||||| ||||| | ||| | ||| ||||| ||||| ||| ||| ||| || Sbjct 148934 AGCTTCGTGAAGATGTAACGCGGCGC-CGCGTGGTCGTTGCCGAGCTGCTGCCGCGAGCC 148992 Query 273833 AAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCAT 273892 ||||| ||||| |||| || ||| |||||||||| ||| | | | ||| ||||| Sbjct 148993 GAACTGCCCCTCCGGCACGAGGAGGTTGATGTTGTTGCCGCCGGTGAAGTTCTGCGCCAT 149052 Query 273893 ATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTG 273931 || | || ||| |||| ||||| |||||||||||||| Sbjct 149053 CTTGATCATGGTCTCCTGCAGGGAGACCTCGCCGTGGTG 149091 >seq2 Length=630681 Score = 91.5 bits (100), Expect = 3e-13 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 44005 TACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACTCCGTTTTATCCCCGGAGTCCA 44064 || |||||| |||||| ||||| || | ||||| || ||||| || || || ||||| Sbjct 316416 TATGGAAAGACTCAGGAAATTCCCCAGTCCGAAAGAACACCGTTCTACCCACGCAGTCCC 316475 Query 44065 TATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAAAAATTATCGCGAGTCGTATGGG 44124 |||| |||||||||||| ||||| || ||||| | || || || ||| || | || Sbjct 316476 TATGCTGTGGCGAAGCTGTATGCATACTGGATGACTGTCAACTACCGGGAGGCGCACGGC 316535 Query 44125 ATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAGTCCC 44166 || |||| |||||| |||| || || |||| |||||| Sbjct 316536 ATTTTCGCATGTAATGGCATTTTATTTAACCACG--AGTCCC 316575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046737912510784