Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq88 131 4e-25 seq44 129 1e-24 >seq88 Length=784127 Score = 131 bits (144), Expect = 4e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972 || ||| | | || || |||||||| || || || || || |||||| | |||||||||| Sbjct 682794 TTTAAAGGATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGG 682853 Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 | | ||||| ||||| ||||| || ||||| |||||||| || || ||||| | Sbjct 682854 AGGCCAGCGACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGC 682913 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 |||||||||| || || ||||| || || || ||||| || || || | || || || | Sbjct 682914 CGGACCAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGG 682973 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||| |||| || || || || ||||| || || Sbjct 682974 ACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGT 683010 Score = 125 bits (138), Expect = 2e-23 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972 || ||| | | || || |||||||| || || || || || |||||| | |||||||||| Sbjct 682289 TTTAAAGGATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGG 682348 Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 | | ||||| ||||| ||||| || ||||| |||||||| || || ||||| | Sbjct 682349 AGGCCAGCGACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGC 682408 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 |||||||||| || || ||||| || || || ||||| || || || | || || || | Sbjct 682409 CGGACCAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGG 682468 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||| |||| || || || || || || || || Sbjct 682469 ACTACAACATCCAGAAGGAGTCGACGCTTCACCTGGT 682505 >seq44 Length=1445935 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || |||||| | ||||||||||| | ||| Sbjct 1050201 CAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGCCAGCGAC 1050142 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| |||||||| || || ||||| ||||||||||| Sbjct 1050141 ACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAG 1050082 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || || || | || || || || || ||| || Sbjct 1050081 CGTCTGATCTTTGCGGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATC 1050022 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 1050021 CAGAAGGAGTCGACGCTGCACCTGGT 1049996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729719410624