Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20francai_20[genbank_20GCA_5F001766655.1_202016-10-14] 96 sequences; 17,721,985 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq88 176 4e-39 seq44 172 5e-38 >seq88 Length=784127 Score = 176 bits (194), Expect = 4e-39 Identities = 183/236 (78%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 |||||| ||||||||| || || | |||||| |||||||| ||||||||| ||||| | Sbjct 683035 CATCAC-GCCGCCGCGGAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGT 682977 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 |||| | ||| ||||| | || || ||||||||||| || || ||||| ||||| |||| Sbjct 682976 AGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGT 682917 Query 41748 CCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTC 41806 ||| || | || |||||||||| ||| || |||| ||| | | |||||||| Sbjct 682916 CCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTATCGATCGTGTCGCTG 682858 Query 41807 GACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||||||| | || ||||| || |||||||||||||| ||||| |||||||| Sbjct 682857 GCCTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682802 Score = 168 bits (186), Expect = 6e-37 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||||||||| || || | |||||| || ||||| ||||||||| ||||| ||||| | Sbjct 682525 CGCCGCCGCGGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 682466 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||| ||||| | || || ||||||||||| || || ||||| ||||| ||||||| | Sbjct 682465 CGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCG 682406 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || |||||||||| ||| || |||| ||| | | |||||||| | |||| Sbjct 682405 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTATCGATCGTGTCGCTGGCCTCC 682347 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || ||||| || |||||||||||||| ||||| |||||||| Sbjct 682346 ACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 682297 >seq44 Length=1445935 Score = 172 bits (190), Expect = 5e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| |||||||| ||||||||| ||||| ||||| | Sbjct 1049977 GCCGCCGCGGAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 1050036 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||||||||| || || ||||| ||||| ||||||| || Sbjct 1050037 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGCGG 1050096 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || |||| ||| | | |||||||| | ||||| Sbjct 1050097 GATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTATCGATCGTGTCGCTGGCCTCCA 1050155 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || ||||| || |||||||||||||| ||||| |||||||| Sbjct 1050156 CCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1050204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303445235200