Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq16 159 7e-34 seq44 100 6e-16 >seq16 Length=341705 Score = 159 bits (176), Expect = 7e-34 Identities = 187/253 (74%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| || | || || || | ||| | |||||||| || ||||| | || || Sbjct 109471 ATCATCACGAATGCGGTCGACATCGAGCACGAGTTCATCTGCGACGCGCTGCCGGTACGT 109530 Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || ||||| |||||| | || || ||||| ||||||||||| || || || ||||| | Sbjct 109531 CTGATTGGGATGAACTCGGAGCTGATGGGTCAGTACATCGAGTTTGTCGCGGACCGTCTG 109590 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | ||||| |||||| | |||||| ||||| || | |||||||||| || |||||| Sbjct 109591 CTCGTTGCGCTTGGTGAAGAGAAATACTACAATTCGACAAACCCCTTTGACTTCATGGAG 109650 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625 | || ||||| || || ||||| ||||||||||| ||| | ||| | || ||||||| | Sbjct 109651 ATGATCTCGCTGCAGGGTAAGACGAACTTCTTCGAGAAGAGGGTCGGCGAGTATCAGAAG 109710 Query 230626 CCTGGTGTGATGA 230638 | |||||||||| Sbjct 109711 GCGGGTGTGATGA 109723 >seq44 Length=115219 Score = 100 bits (110), Expect = 6e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 281736 AGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCA 281795 |||||||||||||| || | || ||||||||| ||||| |||| ||| ||| || Sbjct 49986 AGTTTCGTGAAGATGTATCGCGCCGCCGCGTGGTCGTTACCGAGCTGCTGCCGCGAGCCG 50045 Query 281796 AACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGG 281855 ||||| |||||||| | | ||| ||||| || | |||| | | | ||| |||| Sbjct 50046 AACTGCCCCTCCGGGACGAGGAGGTTGATGTTGTTCCCCCCGGTGAAGTTCTGCGCCATC 50105 Query 281856 TTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCG 281900 || || || ||| |||| ||||| ||||||||||| || ||||| Sbjct 50106 TTAACAATCGTCTCCTGCAGCGACACCTCACCGTGATGGAAGGCG 50150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057822129634940