Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq16 111 2e-19 >seq16 Length=341705 Score = 111 bits (122), Expect = 2e-19 Identities = 483/745 (65%), Gaps = 22/745 (3%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || || |||| || | || ||||| ||||| || || |||| || || || ||||| Sbjct 109706 TGATACTCGCCGACCCTCTTCTCGAAGAAGTTCGTCTTACCCTGCAGCGAGATCATCTCC 109647 Query 16736 ATGAAATCAAAAGGATTAGTAGC-TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAA 16794 ||||| ||||| || || || | | | ||||| ||| || | ||| | Sbjct 109646 ATGAAGTCAAAGGGGTTTGTCGAATTGTAGTATTTCTCTTCACCA-AGCGCAACGAGCAG 109588 Query 16795 TCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACG 16854 | ||||| ||||| || || || || | ||| | || ||||||| || || ||||| Sbjct 109587 ACGGTCCGCGACAAACTCGATGTACTGACCCATCAGCTCCGAGTTCATCCCAATCAGACG 109528 Query 16855 TACCGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAATA- 16912 |||||| || || || | || |||| |||| || | ||||| | | | || || Sbjct 109527 TACCGGCAGCGCGTCGCAGATGAACTCGT-GCTCGATGTCGACCGCATTCGTGATGATCT 109469 Query 16913 CTAGCAA-CTCGTTCCTCGGACGGTGTATGTTTAAGATGTT---TAAACATCAGACATGC 16968 | |||| | || || ||| | | || || | || | | | | |||||| || Sbjct 109468 CCAGCACGCGCGA-CCGCGGCAACT-TGTGCTTGATGTGGTGCGTGTAAAGCAGACACGC 109411 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 || || || ||||||||||| | ||| || |||||| || |||| || || Sbjct 109410 AAAGTCCGTGTGCAATCCCTCGTCCCGTGAGATCAGCTCGTTACTGAAGGTCAGTCCCGG 109351 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 |||| || || ||||| | ||| |||| |||| |||||||| |||||||| || || Sbjct 109350 CATCACGCCGCGCTTCTTAAGCCAGAATAGCGCGCAAAACGACCCGGAAAAGAAGATGCC 109291 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCA 17148 ||| || | ||||||||| || | || || | | | || || | | | | ||||| Sbjct 109290 CTCCACCGCTGCAAACGCAATCAGGCGCTC-CTGGAAGCTGC-TC-TCGCTCCCGATCCA 109234 Query 17149 TTTCTGCA---CCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205 | ||| |||||||||| || | || |||||| ||||| | || || | | Sbjct 109233 ---CCGCACGGCCCACTCGGCCTTCTTCTGAATGCAAGGTATCGTCTGGATCGCATGCAG 109177 Query 17206 TAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTC 17265 || | | || || | | |||| |||||||| || | || | ||| | || Sbjct 109176 CAAGCTTACCTTCTCATCAGGATCGAGGATATACGTGTCCAACAGCACTGAGTAGGTCTC 109117 Query 17266 GGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTT 17324 ||||| || |||||||| | |||||| || || || ||| || || |||| ||| | Sbjct 109116 CGAGTGGATATTCTCCATCATCAGCTGAAACCCATAGAACGCA-CGCGCCTCCGGTATCT 109058 Query 17325 GAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGA 17384 || || ||| || | ||| || || ||| ||||||| |||||||| | |||| Sbjct 109057 TCACATCAGTCATGAAGCGCTGCGCGAGGTTCTCGATCACGATACCGTCGCTTCCTGCGA 108998 Query 17385 AAAACGCCAATATATGCTTAATGAA 17409 | || || | | ||||| ||||| Sbjct 108997 AGAAGGCAAGCACGTGCTTGATGAA 108973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544707233840