Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq9 131 2e-25 >seq9 Length=527489 Score = 131 bits (144), Expect = 2e-25 Identities = 431/657 (66%), Gaps = 20/657 (3%) Strand=Plus/Plus Query 53756 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 53815 || ||||||||||| | || || || || || || | || || || || |||| Sbjct 426842 ATAATCTCAGTGCATAAGTTGGAGCATTTAATCGTGCCAATATGTTTCTGGTTCGACTTT 426901 Query 53816 TTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATA 53875 ||||||||||||||||| || || ||||| || ||| ||||| ||||| | |||| | Sbjct 426902 TTGTTACACGCATCCTTGTAGAGCATGAACGGAACACCCGTTTCGATCTGAGTCTCTAAA 426961 Query 53876 ATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTC----TTTTCTCTTTC 53931 || || ||| | | | || | || | ||| | | |||| | ||| Sbjct 426962 ATGGCAAACCACAATTCCTGTGCTTGGATCGTGC----GTACCCCCATATTTTTTTCTTC 427017 Query 53932 GTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATT 53990 ||| | ||||| |||||||| || | |||| | || | | | ||| || || Sbjct 427018 GTAACTTTCGTACAAGCGTTCAAAATCTT-TCCCATAGCAGTCGCTGAGTCCCGGGCA-- 427074 Query 53991 CATCC--GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 54048 | | | ||| ||| | || ||| | | || ||| || || | |||||||||||| Sbjct 427075 CGTGCAGGGATCCATTAGCGTCCAAGTTTTCTGATTCTTTACACGCTCCATAAAGAGATC 427134 Query 54049 AGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 54107 |||||||||||| || || || ||||| | | | || ||||| || || || || Sbjct 427135 AGGAATCCAAAG-GCCGTAGAAGAGATCGCGCGCACGTTGATCCTCCTTACCCGTGTTAC 427193 Query 54108 TTTTAAG-ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATA 54166 || || ||| | ||| | | ||| |||| |||||| || |||| |||||| | | Sbjct 427194 GCTTCAGCATC-ACAAACTCGAAAATGTCAGCATGCCATGGCTCCAGGTATATCGCAAAG 427252 Query 54167 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 54226 | || || ||| || |||||||| | ||| | |||||||| || |||| | | Sbjct 427253 GCGCCCTTGCGCTTGCCGCCACCCTGATCGACGTAGCGGGCGGTGTTGTTGAAAACACGC 427312 Query 54227 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 54286 | ||| || | | ||||||||| | |||||| || |||| |||||||||||| | Sbjct 427313 AGCATAGGCACGAGACCATTGGAGGTACCATTCGTACCGGCAATATAGCTTCCAGACGAG 427372 Query 54287 CGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 54346 || || ||| | ||| || ||||| || ||| ||| ||| | ||| Sbjct 427373 CGGATGTTATGGACATGTAGCCCAATCCCACCAGCCGATTTGCTGATCACGGCGGTCTCC 427432 Query 54347 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACA 54402 || | ||||| ||||||||||| || ||||| || |||| | || | |||||||| Sbjct 427433 TTCAGTGTATCGTAGATGCCCTCAATGCTATCCTCTTTCATAGCTACG-AGAAAACA 427488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720575830240