Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq16 370 1e-97 seq4 131 2e-25 >seq16 Length=341705 Score = 370 bits (410), Expect = 1e-97 Identities = 595/846 (70%), Gaps = 14/846 (2%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 |||||||| |||||| ||| | ||||| || || |||| ||||| ||||||| |||| Sbjct 108820 GAGAACCCGTACCGGTTTGTGCTGTTCCCGATCCAGTACCACGACATCTGGCGCAAGTAC 108879 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || || ||| | ||||||| || |||||| | || ||| || |||| | Sbjct 108880 AAGGAGCAAGAGAGCTGCATCTGGACGGTGGAGGAGATCGATCTGGGCAGCGACATGGTG 108939 Query 116711 GACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTC 116770 ||||||| | ||||||| |||||| || ||||||||||||||||| ||||| ||| Sbjct 108940 GACTGGGCGAAGCTGAACGATGGCGAGCGACACTTCATCAAGCACGTGCTTGCCTTCTTC 108999 Query 116771 GCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAG 116830 || | |||||||| ||||| | |||||| || | |||| ||| || ||| || Sbjct 109000 GCAGGAAGCGACGGTATCGTGATCGAGAACCTCGCGCAGCGCTTCATGACTGATGTGAAG 109059 Query 116831 GTGGCCGAGGCGCGGTGC-TTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 | | ||||||| |||| ||||| || |||||| | |||||||| | |||||||| Sbjct 109060 ATACCGGAGGCGC-GTGCGTTCTATGGGTTTCAGCTGATGATGGAGAATATCCACTCGGA 109118 Query 116890 AATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTT 116949 | || || || | |||||||| | | | | | || |||||| | | ||| | Sbjct 109119 GACCTACTCAGTGCTGTTGGACACGTATATCCTCGATCCTGATGAGAAGGTAAGCTTGCT 109178 Query 116950 GAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGAT 117009 | | || ||| ||||||| || ||| | | |||||||||||||||| |||| ||||| Sbjct 109179 GCATGCGATCCAGACGATACCTTGCATTCAGAAGAAGGCCGAGTGGGCCGTGCGGTGGAT 109238 Query 117010 CGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGT 117069 ||| || ||| | |||| ||||||||| | || || || || || |||||| | Sbjct 109239 ---CGGGAGCGAGAGCAGCTTCCAGGAGCGCCTGATTGCGTTTGCAGCGGTGGAGGGCAT 109295 Query 117070 CTTCTTTT-CGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCG 117128 |||||||| |||| |||| | ||| |||| ||||| ||||| |||||| | ||||| | Sbjct 109296 CTTCTTTTCCGGGTCGTTTTG-CGCGCTATTCTGGCTTAAGAAGCGCGGCGTGATGCCGG 109354 Query 117129 GCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCT 117188 | ||||| ||||| |||||||| ||||| |||||||||| |||| |||||||| | Sbjct 109355 GACTGACCTTCAGTAACGAGCTGATCTCACGGGACGAGGGATTGCACACGGACTTTGCGT 109414 Query 117189 GTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAG----CGCGG-CGCGCGTCAGGGAGAT 117243 || |||| | || ||| | ||| | || ||||| ||||||| |||||| Sbjct 109415 GTCTGCTTTACACGCACCACATCAAGC--ACAAGTTGCCGCGGTCGCGCGTGCTGGAGAT 109472 Query 117244 CGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCT 117303 | |||| | ||||||| ||||||||| ||| || ||| ||||||||||| ||||| Sbjct 109473 CATCACGAATGCGGTCGACATCGAGCACGAGTTCATCTGCGACGCGCTGCCGGTACGTCT 109532 Query 117304 GCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCT 117363 | | || | || | || |||| || ||||||||||| ||||| ||| | ||||| Sbjct 109533 GATTGGGATGAACTCGGAGCTGATGGGTCAGTACATCGAGTTTGTCGCGGACCGTCTGCT 109592 Query 117364 GCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCT 117423 | | ||| | | | || ||||||| || | ||||| | ||||| ||| | | Sbjct 109593 CGTTGCGCTTGGTGAAGAGAAATACTACAATTCGACAAACCCCTTTGACTTCATGGAGAT 109652 Query 117424 CATCTC 117429 ||||| Sbjct 109653 GATCTC 109658 >seq4 Length=877237 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||| | |||| ||||| || | | Sbjct 46605 ATGCAGATCTTCGTGAAGACACTGACAGGCAAGACGATCGCGCTCGAGGTCGAGGCGAGC 46664 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || || | || || |||||||| ||| |||| ||| Sbjct 46665 GATACGATCGATAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCGGATCAG 46724 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||| | |||||||| Sbjct 46725 CAGCGTCTGATCTTCGCAGGCAAGCAGCTGGAGGAGGGCCGCACATTGGCGGACTACAAT 46784 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||||||||| || ||| | ||| |||| ||||| Sbjct 46785 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGAGAGGCGG 46831 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || ||||| || ||| | |||| ||||| || | Sbjct 46376 AATGCAGATCTTCGTGAAGACACTGACAGGCAAGACGATCGCGCTCGAGGTCGAGGCGAG 46435 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | |||| || || | || || |||||||| ||| |||| || Sbjct 46436 CGATACGATCGATAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCGGATCA 46495 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| | |||||||| Sbjct 46496 GCAGCGTCTGATCTTCGCAGGCAAGCAGCTGGAGGAGGGCCGCACATTGGCGGACTACAA 46555 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| ||||||| || || ||| |||| || | || ||| Sbjct 46556 TATCCAGAAGGAGTCCACGCTACACCTGGTGCTGCGTCTGCGTGGTGGC 46604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218311246880