Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq4 125 5e-24 >seq4 Length=877237 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||||| || || ||||| || |||||||| | | Sbjct 46603 CCACCACGCAGACGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATATTGTAGTCCGCC 46544 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || |||| ||||||||||||||| || || |||||||| || ||| Sbjct 46543 AATGTGCGGCCCTCCTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCCGGGGGA 46484 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | || | |||| |||| ||| ||||| Sbjct 46483 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTATCGATCGTATCGCTCGCCTCGACC 46424 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||| || ||||| || || || ||||| ||||||||||| Sbjct 46423 TCGAGCGCGATCGTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCAT 46377 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | ||||||||||| | || || ||||| || |||||||| | | Sbjct 46831 CCGCCTCTCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCC 46772 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || |||| ||||||||||||||| || || |||||||| || ||| Sbjct 46771 AATGTGCGGCCCTCCTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCCGGGGGA 46712 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | || | |||| |||| ||| ||||| Sbjct 46711 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTATCGATCGTATCGCTCGCCTCGACC 46652 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||| || ||||| || || || ||||| ||||||||||| Sbjct 46651 TCGAGCGCGATCGTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCAT 46605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071456633280