Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq9 235 5e-57 seq4 93.3 4e-14 >seq9 Length=527489 Score = 235 bits (260), Expect = 5e-57 Identities = 512/756 (68%), Gaps = 18/756 (2%) Strand=Plus/Plus Query 23059 GGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT 23118 |||||||||||| | ||| || || |||| ||| || || |||||||| | || | Sbjct 426829 GGACGTGTACTCAATAATCTCAGTGCATAAGTTGGAGCATTTAATCGTGCCAATATGTTT 426888 Query 23119 CTGGTT-GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177 |||||| | |||| | || |||| |||||||||||||||| |||| ||||| |||| Sbjct 426889 CTGGTTCGACTTTTTG-TTACACGCATCCTTGTAGAGCATGAACGGAACACCCGTTTCGA 426947 Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGC 23237 ||| | ||| | || || ||||| ||| || || | ||| |||||| | Sbjct 426948 TCTGAGTCTCTAAAATGGCAAACCACAATTCCTGTGCTTGGA----TCGTGCGTACCCCC 427003 Query 23238 CT----TCTTCCTCGTACTTTTGGTACAACGCGT-CAAATTCGGCACCGTAACAGTCGGC 23292 | | ||| ||||| ||| |||||| |||| |||| || || || |||||| Sbjct 427004 ATATTTTTTTCTTCGTAACTTTCGTACAA-GCGTTCAAAATCTTTCCCATAGCAGTCGCT 427062 Query 23293 CAGGCC-GGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTC 23351 || || |||| |||| ||| ||| || |||| || | ||| | || || Sbjct 427063 GAGTCCCGGGCACGTGCAG-GGATCCATTAGCGTCCAAGTTTTCTGATTCTTTACACGCT 427121 Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||||| ||||| || ||||| || ||||||| || ||||| || || ||||| | Sbjct 427122 CCATAAAGAGATCAGGAATCCAAAGGCCGTAGAAGAGATCGCGCGCACGTTGATCCTCCT 427181 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 | || ||||| |||| || ||| || || | ||| |||||||| ||||| |||| Sbjct 427182 TACCCGTGTTACGCTTCAGCATCACAAACTCGAAAATGTCAGCATGCCATGGCTCCAGGT 427241 Query 23472 AAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGT 23531 | | ||||| |||||| | ||| ||| |||||||||||||| ||||| ||||||| Sbjct 427242 ATATCGCAAAGGCGCCCTTGCGCTTGCCGCCACCCTGATCGACGTAGCGGGCGGTGTTGT 427301 Query 23532 TGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCC--GCCTACGCCCGCCACACT 23589 || | || | ||||| ||||||||||| ||||| | || | || || || | | Sbjct 427302 TGAAAACACGCAGCATAGGCACGAGACCATTGGAGGTACCATTCGTA--CCGGCAATATA 427359 Query 23590 CGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATAT 23649 || | || | ||| || || || | || || || || ||||||| || Sbjct 427360 GCTTCCAGACGAGCGGATGTTATGGACATGTAGCCCAATCCCACCAGCCGATTTGCTGAT 427419 Query 23650 CATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGAC 23709 || ||| | ||||| || |||||||||||||| ||||| |||||||| | || || Sbjct 427420 CACGGCGGTCTCCTTCAGTGTATCGTAGATGCCCTCAATGCTATCCTCTTTCATAGCTAC 427479 Query 23710 CAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGC 23769 | |||||||| |||||| | ||||| ||| ||| ||||| || | || Sbjct 427480 GAGAAAACACGAGCTCATTTGTGGCCGTGGCGTCCCGGAGTTGAAGAGTGTTGGTGTAGC 427539 Query 23770 GTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805 ||| || ||| |||| | ||||||| || ||||| Sbjct 427540 GTGAGTGAAGAATCCCCTTGACATTAAATCATACGT 427575 Score = 111 bits (122), Expect = 1e-19 Identities = 311/472 (66%), Gaps = 4/472 (1%) Strand=Plus/Plus Query 22124 ATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTC 22183 || |||| ||||| || |||||||| || |||||||||||||| || ||| | ||| Sbjct 425891 ATAGCGTCAGCGGCTGGGCGTGTGCGAAGGTAGTACATGCCCGTCTTGAGGCCC-TGTTC 425949 Query 22184 CACGCGTAAAAA-TGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATT 22242 | || ||||| || || ||||| | ||| | || |||||| | | || Sbjct 425950 CCAGCAGAAAAAGTGCATGGACGTTATGCGGCCAGAGGAAGGACTCTCCATGAAGAGGTT 426009 Query 22243 GAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACG 22302 | ||||| ||| ||||| || ||| || || | ||||| | || | || Sbjct 426010 TAGAGACTGGGACTGGTCGATGTACTTTCCGCGGTCAACAGCCATTTCGATTATCCGCCG 426069 Query 22303 CATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGAT 22362 | ||| || ||||| |||||| |||| || | | ||| || ||| || || || Sbjct 426070 CTGCGAAATCTCCCAGACGGTCCTGTAGAGCTCCTTGAGGTCCTTCGGAATTTCTTTGAC 426129 Query 22363 CCTCTGGACGGACCCGTT-ATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAAC 22421 || | || ||||| | || || ||| ||| ||| || || ||||||| | Sbjct 426130 GGATTGAATAGAGCCGTTGAAAGTA-ATAATCTCATTGCGAATAGTGTCATTCCACATCC 426188 Query 22422 CGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGA 22481 || || ||| ||| ||||| | |||||| || ||||||| ||| | | Sbjct 426189 CGCGCTCGATCAGATCACGCACCAGGTATTTGTTCACAACAGGAAACTCTCCGCTTAGAA 426248 Query 22482 CGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCT 22541 | || || ||||||| || ||||| || || || ||| | |||||||| |||| || | Sbjct 426249 CACGACGCAGGTAAATATTTGATGTAAAGGGCTCAAAACACTCATTGTTGCCCAAGATTT 426308 Query 22542 GAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCC 22593 | | || || ||||||||||| ||||||||||||| ||||| | || ||| Sbjct 426309 GCGATGTTGACGCGGTCGGCATGGGCGCCAACAGTAAAGAGTTGCGCATGCC 426360 >seq4 Length=877237 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||||||||| |||||| | |||| || || || Sbjct 46604 CATGCAGATCTTCGTGAAGACACTGACAGGCAAGACGATCGCGCTCGAGGTCGAGGCGAG 46663 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | || || || || ||| ||||| ||| | || || || || Sbjct 46664 CGATACGATCGATAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCGGATCA 46723 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| ||||| ||| |||| || || || || || || Sbjct 46724 GCAGCGTCTGATCTTCGCAGGCAAGCAGCTGGAGGAGGGCCGCACATTGGCGGACTACAA 46783 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || || || || ||||| || | ||||| |||||| Sbjct 46784 TATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGAGAGGCGGT 46832 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||||||||| |||||| | |||| || || || | Sbjct 46377 ATGCAGATCTTCGTGAAGACACTGACAGGCAAGACGATCGCGCTCGAGGTCGAGGCGAGC 46436 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || || ||| ||||| ||| | || || || ||| Sbjct 46437 GATACGATCGATAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCGGATCAG 46496 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || ||||| ||||| ||| |||| || Sbjct 46497 CAGCGTCTGATCTTCGCAGGCAAGCAGCTGGAGGA 46531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765631052960