Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq9 118 1e-21 >seq9 Length=527489 Score = 118 bits (130), Expect = 1e-21 Identities = 459/708 (65%), Gaps = 20/708 (3%) Strand=Plus/Plus Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 63002 || ||||| |||| || ||||| ||| || |||| || || | || |||||| Sbjct 426791 GCGACAGACGCCAAGTTGCACACCGCTGTTTCGTTAGGGGACGTGTACTCAATAATCTCA 426850 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 ||||| | || || || || || || | || || || || ||||||||||||| Sbjct 426851 GTGCATAAGTTGGAGCATTTAATCGTGCCAATATGTTTCTGGTTCGACTTTTTGTTACAC 426910 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 |||||||| || || ||||| ||| ||| ||||| ||||||| |||| ||| || | Sbjct 426911 GCATCCTTGTAGAGCATGAACGGAACACCCGTTTCGATCTGAGTCTCTAAAATGGCAAAC 426970 Query 63123 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTCC----TTTCTCTTTCGTATAGAGT 63178 || | | | || | || | ||| | || ||| | |||||| Sbjct 426971 CACAATTCCTGTGCTTGGATCGTGC----GTACCCCCATATTTTTTTCTTCGTAACTTTC 427026 Query 63179 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA-TCTAGGACATTCATCC--GG 63235 ||||| ||||| || || | |||| | || | | | || || || | | | || Sbjct 427027 GTACAAGCGTTCAAAATCTT-TCCCATAGCAGTCGCTGAGTCCCGGGCA--CGTGCAGGG 427083 Query 63236 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63295 | ||| | || ||| | | || ||| || || | ||||||||||||||||||||| Sbjct 427084 ATCCATTAGCGTCCAAGTTTTCTGATTCTTTACACGCTCCATAAAGAGATCAGGAATCCA 427143 Query 63296 AAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATT-CTTTTTAAGA 63353 ||| || || || ||||| | | | || ||||| || || || || | || | | Sbjct 427144 AAG-GCCGTAGAAGAGATCGCGCGCACGTTGATCCTCCTTACCCGTGTTACGCTTCAGCA 427202 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 || | ||| | | ||| |||| |||||| || |||| |||||| || | | || Sbjct 427203 TC-ACAAACTCGAAAATGTCAGCATGCCATGGCTCCAGGTATATCGCAAAGGCGCCCTTG 427261 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||| || |||||||| | ||| | |||||||| || |||| | || ||| || Sbjct 427262 CGCTTGCCGCCACCCTGATCGACGTAGCGGGCGGTGTTGTTGAAAACACGCAGCATAGGC 427321 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 | | ||| || || ||||||| ||||||| ||||||| |||| | || || ||| Sbjct 427322 ACGAGACCATTGGAGGTACCATTCGTACCGGCAATATAGCTTCCAGACGAGCGGATGTTA 427381 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 | ||| || || || || ||| ||| ||| | ||| || | || Sbjct 427382 TGGACATGTAGCCCAATCCCACCAGCCGATTTGCTGATCACGGCGGTCTCCTTCAGTGTA 427441 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACA 63640 || |||||||| || |||||||| || |||| | || | |||||||| Sbjct 427442 TCGTAGATGCCCTCAATGCTATCCTCTTTCATAGCTACG-AGAAAACA 427488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816513564640