Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq9 132 6e-26 >seq9 Length=527489 Score = 132 bits (146), Expect = 6e-26 Identities = 462/708 (65%), Gaps = 20/708 (3%) Strand=Plus/Plus Query 65736 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 65795 || ||||| |||| || || || ||| || |||| || || | || |||||| Sbjct 426791 GCGACAGACGCCAAGTTGCACACCGCTGTTTCGTTAGGGGACGTGTACTCAATAATCTCA 426850 Query 65796 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 65855 ||||| | || || || || || || | || || || || ||||||||||||| Sbjct 426851 GTGCATAAGTTGGAGCATTTAATCGTGCCAATATGTTTCTGGTTCGACTTTTTGTTACAC 426910 Query 65856 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 65915 |||||||| || || ||||| ||| ||| ||||| ||||||| |||| ||| || | Sbjct 426911 GCATCCTTGTAGAGCATGAACGGAACACCCGTTTCGATCTGAGTCTCTAAAATGGCAAAC 426970 Query 65916 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTC----TTTTCTCTTTCGTATAGTGT 65971 || | | | || | || | ||| | | |||| | |||||| | Sbjct 426971 CACAATTCCTGTGCTTGGATCGTGC----GTACCCCCATATTTTTTTCTTCGTAACTTTC 427026 Query 65972 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCATCC--GG 66028 ||||| ||||| || || | |||| | || | | | ||| || || | | | || Sbjct 427027 GTACAAGCGTTCAAAATCTT-TCCCATAGCAGTCGCTGAGTCCCGGGCA--CGTGCAGGG 427083 Query 66029 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 66088 | ||| | || ||| | | || ||| || || | ||||||||||||||||||||| Sbjct 427084 ATCCATTAGCGTCCAAGTTTTCTGATTCTTTACACGCTCCATAAAGAGATCAGGAATCCA 427143 Query 66089 AAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG-A 66146 ||| || || || | ||| | | | || ||||| || || || || || || | Sbjct 427144 AAG-GCCGTAGAAGAGATCGCGCGCACGTTGATCCTCCTTACCCGTGTTACGCTTCAGCA 427202 Query 66147 TCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 66206 || | ||| | | ||| ||| |||||| || |||| |||||| || | | || Sbjct 427203 TC-ACAAACTCGAAAATGTCAGCATGCCATGGCTCCAGGTATATCGCAAAGGCGCCCTTG 427261 Query 66207 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 66266 || ||| || |||||||| | ||| | |||||||| || |||| | || ||| || Sbjct 427262 CGCTTGCCGCCACCCTGATCGACGTAGCGGGCGGTGTTGTTGAAAACACGCAGCATAGGC 427321 Query 66267 ATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTA 66326 | | ||||||||| |||||||| || |||| |||||||||||| | || || ||| Sbjct 427322 ACGAGACCATTGGAGGTACCATTCGTACCGGCAATATAGCTTCCAGACGAGCGGATGTTA 427381 Query 66327 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 66386 | ||| || || || || ||| ||| ||| | ||| || | ||| Sbjct 427382 TGGACATGTAGCCCAATCCCACCAGCCGATTTGCTGATCACGGCGGTCTCCTTCAGTGTA 427441 Query 66387 TCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACA 66433 || ||||||||||| || ||||| || |||| | || | |||||||| Sbjct 427442 TCGTAGATGCCCTCAATGCTATCCTCTTTCATAGCTACG-AGAAAACA 427488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658171664651920