Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 >seq3 Length=1041144 Score = 107 bits (118), Expect = 2e-18 Identities = 384/590 (65%), Gaps = 28/590 (5%) Strand=Plus/Plus Query 20933 AACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAG 20992 |||||| || ||||||| || ||||| || | ||||| || | || || || | | Sbjct 833360 AACGTGATTTTTGTAAATATGCGCGTCGCCGAGTGTGTGGACGAGCTCCCCAGGCTTTAA 833419 Query 20993 GCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGAC 21052 ||||| | | ||||| ||| ||| | |||||||| |||||||||||| || || Sbjct 833420 ACCCGTTGCTTTGGCGATGAGAACCGTTAAAAGGGCGTATGAGGCGATGTTAAAAGGTAC 833479 Query 21053 CCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCC------CCCCG 21106 |||||| ||||| ||| ||| | ||||| | | |||||| |||||| | | Sbjct 833480 CCCGAGCCCCATATCGCAGGAGCGTTGGTATAACATGCAGGAAAGCTCCTTCGTTGCGGG 833539 Query 21107 AGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGC 21166 | |||||| || || | | || ||| ||||| ||||| |||||||| || ||| Sbjct 833540 ATTCACGTAGAATTGCCCGAGAAGGTGGCAAGGCGGGAGCGCCATCCGATGCAG---CGC 833596 Query 21167 G---GGGTTCCACGCGCACATAACG---ATGCGCCGATCGTGGGGCCGCCTGTTAATTAG 21220 | || ||||||||| |||| | || || ||||||| || | |||| | || Sbjct 833597 GCATGGATTCCACGCG---ATAAAGAGCATCCGGCGATCGTTCGG--GTTTGTT-TTGAG 833650 Query 21221 ---ATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCC 21277 ||||| | ||| | ||| || || || | || ||||| || || | Sbjct 833651 CGTCTCCACGATGTATTTGATCTGATCAACGCCTTTTCCATCGTAATTAGCTTTATGATT 833710 Query 21278 CCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTC 21337 |||| ||||| || || || | ||| || || ||||| || || || ||||| ||| Sbjct 833711 GGTGTATTCCGCGCCGAAGTGGCGCCATTGAAAGCCGTAAACGGGGCCGAGATCCATCTC 833770 Query 21338 GCGGCGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAA 21396 | || | |||||| || | | | |||||||||||| |||| | ||||| | Sbjct 833771 CTCGTTGT-CGTAAAGCCCGCGGCTGTCGAGAAAGGCGCGGGAGCCGTTATCATCCCAGA 833829 Query 21397 TTTTTA-CGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGC 21455 | | | | || ||| ||| | | || ||| ||| | | |||||||||| Sbjct 833830 TGTGAACCCCCTTATCGC-TCAGAAGCTTCGCGTTGGTTTCGCCGCGAAGAAACCACAGC 833888 Query 21456 AACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGG 21505 |||||||| || || | |||||| || | |||||| || | || ||| Sbjct 833889 AACTCCTCGGAAACACCACGCCAAAAGACGCGTTTGGTTGTCAGCAAAGG 833938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427775280534240