Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq16 113 4e-20 >seq16 Length=341705 Score = 113 bits (124), Expect = 4e-20 Identities = 295/445 (66%), Gaps = 4/445 (1%) Strand=Plus/Plus Query 52618 GAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttC-GGGTAGTTTTGCGGC 52676 || || ||| | |||||||| ||||| || | || ||||| |||| |||||||| | Sbjct 109261 GAGCGCCTGATTGCGTTTGCAGCGGTGGAGGGCATCTTCTTTTCCGGGTCGTTTTGCG-C 109319 Query 52677 AATATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGAT 52736 |||| | | || | ||| | ||||| || || || || || |||||| |||| Sbjct 109320 GCTATTCTGGCTTAAGAAGCGCGGCGTGATGCCGGGACTGACCTTCAGTAACGAGCTGAT 109379 Query 52737 ATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTGTATTATAATACGCGCGTTAA 52796 || || ||||| ||| ||||||| || ||||||||| || ||| | | | | || Sbjct 109380 CTCACGGGACGAGGGATTGCACACGGACTTTGCGTGTCTGCTTTACACGCACCACATCAA 109439 Query 52797 AGAAAAATTGTCATATGAAAAAATTCTAGACATGTTTAAAGAGGCCGTCGACATTGAAAA 52856 | || ||| | | || || || | | | || |||||||| || | Sbjct 109440 GCACAAGTTGCCGCGGTCGCGCGTGCTGGAGATCATCACGAATGCGGTCGACATCGAGCA 109499 Query 52857 AGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGACCATGATGTG 52916 ||||| | ||||| | || ||| || | || |||||| || ||||| | Sbjct 109500 CGAGTTCATCTGCGACGCGCTGCCGGTACGTCTGATTGGGATGAACTCGGAGCTGATGGG 109559 Query 52917 CGAGTACATCGAGTTTGTTGCGGACAGACTG-TTGATGCAGCTCGGTCAGCCGAAATACT 52975 |||||||||||||||| |||||| | ||| | | ||| ||| ||| | |||||||| Sbjct 109560 TCAGTACATCGAGTTTGTCGCGGACCGTCTGCTCGTTGC-GCTTGGTGAAGAGAAATACT 109618 Query 52976 ATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAAAACAAACT 53035 | ||| || ||||||||| || ||| | | || ||||| |||| || || |||| Sbjct 109619 ACAATTCGACAAACCCCTTTGACTTCATGGAGATGATCTCGCTGCAGGGTAAGACGAACT 109678 Query 53036 TTTTCGAGAGACGTGTGGGCGAGTA 53060 | ||||||| | || |||||||| Sbjct 109679 TCTTCGAGAAGAGGGTCGGCGAGTA 109703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063144289600