Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq9 174 2e-38 >seq9 Length=527489 Score = 174 bits (192), Expect = 2e-38 Identities = 473/706 (67%), Gaps = 16/706 (2%) Strand=Plus/Plus Query 79615 GCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCA 79674 |||||||| |||| || || || ||| || |||| || || | || || ||| Sbjct 426791 GCGACAGACGCCAAGTTGCACACCGCTGTTTCGTTAGGGGACGTGTACTCAATAATCTCA 426850 Query 79675 GTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 79734 ||||| | ||| || ||||| || || | || || || || ||||||||||||| Sbjct 426851 GTGCATAAGTTGGAGCATTTAATCGTGCCAATATGTTTCTGGTTCGACTTTTTGTTACAC 426910 Query 79735 GCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 79794 |||||||| || || ||||||||| ||| ||||| ||||||| |||| ||| || | Sbjct 426911 GCATCCTTGTAGAGCATGAACGGAACACCCGTTTCGATCTGAGTCTCTAAAATGGCAAAC 426970 Query 79795 CAGACGACTCGAGCCTTTATTATAG--ACTTGTATCTCTTTTCTCTTTCGTATTGTGTAT 79852 || | | | || | || | || || | |||| |||| |||| | | Sbjct 426971 CACAATTCCTGTGCTTGGATCGTGCGTACCCCCATATTTTTT-TCTT-CGTAACTTTCGT 427028 Query 79853 ATAATCGTTCGAACTCGTCTCCCCAAACA-TCGTCTAATCCAGGACATTCGT-CAGG-AC 79909 | || ||||| || || | |||| | || ||| | ||| || || ||| |||| | Sbjct 427029 ACAAGCGTTCAAAATCTT-TCCCATAGCAGTCGCTGAGTCCCGGGCA--CGTGCAGGGAT 427085 Query 79910 ACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAA 79969 ||| | || ||| | | || |||||| || | ||||||||||||||||||||||| Sbjct 427086 CCATTAGCGTCCAAGTTTTCTGATTCTTTACACGCTCCATAAAGAGATCAGGAATCCAAA 427145 Query 79970 GAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAG-ATC 80027 | || || || ||||| | | | || ||||| || || || || || || ||| Sbjct 427146 G-GCCGTAGAAGAGATCGCGCGCACGTTGATCCTCCTTACCCGTGTTACGCTTCAGCATC 427204 Query 80028 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCG 80087 | ||| | | ||| |||| |||||| || |||| |||||| || | | ||| || Sbjct 427205 -ACAAACTCGAAAATGTCAGCATGCCATGGCTCCAGGTATATCGCAAAGGCGCCCTTGCG 427263 Query 80088 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 80147 ||| || |||||||| | ||| | |||||||| || |||| | || ||| || | Sbjct 427264 CTTGCCGCCACCCTGATCGACGTAGCGGGCGGTGTTGTTGAAAACACGCAGCATAGGCAC 427323 Query 80148 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 80207 | ||||||||| |||||||| || |||| |||||||||||| | || || ||| Sbjct 427324 GAGACCATTGGAGGTACCATTCGTACCGGCAATATAGCTTCCAGACGAGCGGATGTTATG 427383 Query 80208 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 80267 | ||| || || || || ||| ||| ||| | ||| || | ||||| Sbjct 427384 GACATGTAGCCCAATCCCACCAGCCGATTTGCTGATCACGGCGGTCTCCTTCAGTGTATC 427443 Query 80268 ATAGATGCCCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACA 80312 ||||||||||| |||||||| || |||| | || | |||||||| Sbjct 427444 GTAGATGCCCTCAATGCTATCCTCTTTCATAGCTACG-AGAAAACA 427488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267560986320