Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq16 98.7 1e-15 >seq16 Length=341705 Score = 98.7 bits (108), Expect = 1e-15 Identities = 287/434 (66%), Gaps = 6/434 (1%) Strand=Plus/Plus Query 50425 GCGTTTGCCATAGTTGAAGGTGTGtttttttCCGG-TAGCTTTGCAGCCATATTTTACAT 50483 |||||||| || || || | || |||||||| | | ||||| || |||| | | Sbjct 109273 GCGTTTGCAGCGGTGGAGGGCATCTTCTTTTCCGGGTCGTTTTGC-GCGCTATTCTGGCT 109331 Query 50484 TAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGA 50543 ||| | ||| | ||||| || || || || || |||||| |||| || || ||||| Sbjct 109332 TAAGAAGCGCGGCGTGATGCCGGGACTGACCTTCAGTAACGAGCTGATCTCACGGGACGA 109391 Query 50544 AGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATC 50603 ||| ||||||| |||||||||||| || |||| | | | || | || || | Sbjct 109392 GGGATTGCACACGGACTTTGCGTGTCTGCTTTACACGCACCACATCAAGCACAAGTTGCC 109451 Query 50604 ATACGAAACAATTTTGGACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCAC 50663 | |||| || ||| | || ||||||||||| | ||||| || Sbjct 109452 GCGGTCGCGCGTGCTGGAGATCATCACGAATGCGGTCGACATCGAGCACGAGTTCATCTG 109511 Query 50664 GGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGA 50723 ||||| | || || || | || |||||| | || ||||| | ||||||| || Sbjct 109512 CGACGCGCTGCCGGTACGTCTGATTGGGATGAACTCGGAGCTGATGGGTCAGTACATCGA 109571 Query 50724 GTTTGTTGCAGACAGATTG-TTGTTGCAGCTGGGACAACCGAAATACTATAATGCACGTA 50782 |||||| || ||| | || | ||||| ||| || || ||||||||| ||| | | Sbjct 109572 GTTTGTCGCGGACCGTCTGCTCGTTGC-GCTTGGTGAAGAGAAATACTACAATTCGACAA 109630 Query 50783 ACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGA-AAGA 50841 |||||||| || ||| | | || ||| || |||| || || ||||| ||||| |||| Sbjct 109631 ACCCCTTTGACTTCATGGAGATGATCTCGCTGCAGGGTAAGACGAACTTCTTCGAGAAGA 109690 Query 50842 CGTGTAGGCGAATA 50855 | || ||||| || Sbjct 109691 -GGGTCGGCGAGTA 109703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013525400160