Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq16 143 4e-29 >seq16 Length=341705 Score = 143 bits (158), Expect = 4e-29 Identities = 577/889 (65%), Gaps = 40/889 (4%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| ||| || ||||| ||| | |||||| || || || | | Sbjct 108841 CTGTTCCCGATCCAGTACCACGACATCTGGCGCAAGTACAAGGAGCAAGAGAGCTGCATC 108900 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 |||||||| || ||| |||||||| || ||| || || |||| || | ||| Sbjct 108901 TGGACGGTGGAGGAGATCGATCTGGGCAGCGACATGGTGGACTGGGCGAAGC---TGAAC 108957 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || |||||| | || || |||| | | |||||||| || || ||| || ||| Sbjct 108958 GATGGCGAGCGACACTTCATCAAGCACGTGCTTGCCTTCTTCGCAGGAAGCGACGGTATC 109017 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || | ||| || || | || ||| || ||| || || |||| | ||||| Sbjct 109018 GTGATCGAGAACCTCGCGCAGCGCTTCATGACTGATGTGAAGATACCGGAGGCG-CGTGC 109076 Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 || || || || || | ||||| ||||| | |||||||| | ||||| ||| | Sbjct 109077 GTTCTATGGGTTTCAGCTGATGATGGAGAATATCCACTCGGAGACCTACTCAGTGCTGTT 109136 Query 125294 TGACATGTACATTCGCGATCCGCA-----ACGTAAACACATGCTCTTTAACGCAATCGAC 125348 |||| ||| || | |||||| | | |||| | |||| | || ||| | Sbjct 109137 GGACACGTATATCCTCGATCCTGATGAGAAGGTAAGCT--TGCTGCAT---GCGATCCAG 109191 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA-- 125406 ||| | || | || | || ||||| | |||| | |||||||||| ||| | Sbjct 109192 ACGATACCTTGCATTCAGAAGAAGGCCGAGTGGGCCGTGCGGTGGATCGGGAGCGAGAGC 109251 Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT-CG 125465 || |||| || | ||| | || || || || || |||||||||||||||| || Sbjct 109252 AG-CTTCCAG----GAGCGCCTGATTGCGTTTGCAGCGGTGGAGGGCATCTTCTTTTCCG 109306 Query 125466 GGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 ||| ||||||| || | || ||||| ||||||||||| | ||||| |||||||| | Sbjct 109307 GGTCGTTTTGC-GCGCTATTCTGGCTTAAGAAGCGCGGCGTGATGCCGGGACTGACCTTC 109365 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTT 125585 ||||||||| | || || || |||||||| | ||| |||||||| ||| || || Sbjct 109366 AGTAACGAGCTGATCTCACGGGACGAGGGATTGCACACGGACTTTGCGTGTCTGCT-TTA 109424 Query 125586 CGC-AACTATCTGCGTCCCGAG-TGC--AGATCCAGCGATGAAAAGGTCATCAACATTGT 125641 | | || | | | | || ||| | || ||| || || |||| | Sbjct 109425 CACGCACCACATCAAGCACAAGTTGCCGCGGTCGCGCG-TG--CTGGAGATCA------T 109475 Query 125642 AACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGAT 125701 || |||| || || || || ||||| | ||| | || ||||| | |||| Sbjct 109476 CACGAATGCGGTCGACATCGAGCACGAGTTCATCTGCGACGCGCTGCCGGTACGTCTGAT 109535 Query 125702 TGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT-GT 125760 ||| ||||||| |||| ||| | ||||||| |||||||| || || ||||| || || Sbjct 109536 TGGGATGAACTCGGAGCTGATGGGTCAGTACATCGAGTTTGTCGCGGACCGTCTGCTCGT 109595 Query 125761 ACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820 ||| | | || | ||||| | | || |||||||| |||||| | | Sbjct 109596 TGCGCTTGGTGAAGAGAAATA-CTACAATTCGACAAACCCCTTTGACTTCATGGAGATGA 109654 Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 | || || |||||||||| ||||| |||||||||| |||| ||||||| Sbjct 109655 TCTCGCTGCAGGGTAAGACGAACTTCTTCGAGAAGAGGGTCGGCGAGTA 109703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057921672880