Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq9 131 2e-25 >seq9 Length=527489 Score = 131 bits (144), Expect = 2e-25 Identities = 464/712 (65%), Gaps = 20/712 (3%) Strand=Plus/Plus Query 62888 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62947 || ||| ||||| |||| || || || ||| || |||| || || | || || Sbjct 426787 CAGGGCGACAGACGCCAAGTTGCACACCGCTGTTTCGTTAGGGGACGTGTACTCAATAAT 426846 Query 62948 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63007 ||||||||| | || || || || || || | || || || || ||||||||| Sbjct 426847 CTCAGTGCATAAGTTGGAGCATTTAATCGTGCCAATATGTTTCTGGTTCGACTTTTTGTT 426906 Query 63008 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63067 |||||||||||| || || ||||| ||| ||| ||||| ||||||| |||| ||| || Sbjct 426907 ACACGCATCCTTGTAGAGCATGAACGGAACACCCGTTTCGATCTGAGTCTCTAAAATGGC 426966 Query 63068 TTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCC----TTTCTCTTTCGTATA 63123 ||| | | | || | || | ||| | || ||| | |||||| Sbjct 426967 AAACCACAATTCCTGTGCTTGGATCGTGC----GTACCCCCATATTTTTTTCTTCGTAAC 427022 Query 63124 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCATCC 63182 | ||||| ||||| || || | |||| | || | | | ||| || || | | | Sbjct 427023 TTTCGTACAAGCGTTCAAAATCTT-TCCCATAGCAGTCGCTGAGTCCCGGGCA--CGTGC 427079 Query 63183 --GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAA 63240 ||| ||| | || ||| | | || ||| || || | ||||||||||||||||| Sbjct 427080 AGGGATCCATTAGCGTCCAAGTTTTCTGATTCTTTACACGCTCCATAAAGAGATCAGGAA 427139 Query 63241 TCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 63299 ||||||| || || || ||||| | | | || ||||| || || || || || Sbjct 427140 TCCAAAG-GCCGTAGAAGAGATCGCGCGCACGTTGATCCTCCTTACCCGTGTTACGCTTC 427198 Query 63300 AG-ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63358 || ||| | ||| | | ||| |||| |||||| || |||| |||||| || | | || Sbjct 427199 AGCATC-ACAAACTCGAAAATGTCAGCATGCCATGGCTCCAGGTATATCGCAAAGGCGCC 427257 Query 63359 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 63418 || ||| || |||||||| | ||| | |||||||| || |||| | || ||| Sbjct 427258 CTTGCGCTTGCCGCCACCCTGATCGACGTAGCGGGCGGTGTTGTTGAAAACACGCAGCAT 427317 Query 63419 TGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT 63478 || | | ||| || || ||||||| ||||||| |||||||||||| | || || Sbjct 427318 AGGCACGAGACCATTGGAGGTACCATTCGTACCGGCAATATAGCTTCCAGACGAGCGGAT 427377 Query 63479 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63538 ||| | ||| || || || || ||| ||| ||| | ||| || | Sbjct 427378 GTTATGGACATGTAGCCCAATCCCACCAGCCGATTTGCTGATCACGGCGGTCTCCTTCAG 427437 Query 63539 CGTGTCATAGATACCCTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACA 63589 || || ||||| ||||| |||||||| || |||| | || | |||||||| Sbjct 427438 TGTATCGTAGATGCCCTCAATGCTATCCTCTTTCATAGCTACG-AGAAAACA 427488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946125416080