Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq9 161 3e-34 >seq9 Length=527489 Score = 161 bits (178), Expect = 3e-34 Identities = 388/573 (68%), Gaps = 18/573 (3%) Strand=Plus/Minus Query 363759 CTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCA 363818 ||| ||||| || || || ||||| ||||| || |||| || || | |||||||| || Sbjct 427336 CTCCAATGGTCTCGTGCCTATGCTGCGTGTTTTCAACAACACCGCCCGCTACGTCGATCA 427277 Query 363819 GGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATAT 363878 |||||| || |||||||| || || ||||| || || || ||||| ||||| || || Sbjct 427276 GGGTGGCGGCAAGCGCAAGGGCGCCTTTGCGATATACCTGGAGCCATGGCATGCTGACAT 427217 Query 363879 TTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCT 363938 ||| |||||| | ||| | |||||||| || ||||| ||||| || ||||| Sbjct 427216 TTTCGAGTTTGTGATGCTGAAGCGTAACACGGGTAAGGAGGATCAACGTGCGCGCGATCT 427157 Query 363939 GTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG--CAGGTAAGAAT 363996 ||||| | |||||| || |||| | |||||| |||| || || ||| || | | Sbjct 427156 CTTCTACGGCCTTTGGATTCCTGATCTCTTTATGGAGCGTGTAAAGAATCAG--AAAACT 427099 Query 363997 TGGTCACTCTTT--TGCCCACACGAATGTCCAGGTCTTTCCGA-TG-TATGGGGTGACGA 364052 ||| | || | | || |||| || || || || ||| || |||||| | || Sbjct 427098 TGGACGCTAATGGATCCCTGCACG--TGCCCGGGACTCAGCGACTGCTATGGGA--AAGA 427043 Query 364053 CTATGTT-GCTCTATACGAAAAGTATGAATCGGAGGGAA-AGGCTCGTAAG-ACAATTCC 364109 | || ||| | ||||||| || ||| | | || | | ||| | || || | Sbjct 427042 TTTTGAACGCT-TGTACGAAAGTTACGAA--GAAAAAAATATGGGGGTACGCACGATCCA 426986 Query 364110 CGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATAT 364169 |||||| | | ||||||||||| | || | ||||| || || || || | || Sbjct 426985 AGCACAGGAATTGTGGTTTGCCATTTTAGAGACTCAGATCGAAACGGGTGTTCCGTTCAT 426926 Query 364170 GTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCA 364229 | | ||||| ||| |||| ||| ||||| |||||| | || |||| || ||| | Sbjct 426925 GCTCTACAAGGATGCGTGTAACAAAAAGTCGAACCAGAAACATATTGGCACGATTAAATG 426866 Query 364230 GAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289 |||| |||| || ||||||||||| ||||| | || |||| || || || || || Sbjct 426865 CTCCAACTTATGCACTGAGATTATTGAGTACACGTCCCCTAACGAAACAGCGGTGTGCAA 426806 Query 364290 CCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA 364322 | | ||||| |||| || ||| |||||||| Sbjct 426805 CTTGGCGTCTGTCGCCCTGCCGCGATTTGTAAA 426773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303351295507916