Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq16 136 4e-27 seq4 118 1e-21 >seq16 Length=341705 Score = 136 bits (150), Expect = 4e-27 Identities = 309/455 (68%), Gaps = 16/455 (4%) Strand=Plus/Plus Query 46153 GAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA-GTTTTGC-CG 46210 ||||| || | || ||||| ||||||||| |||| ||||| || ||||||| || Sbjct 109261 GAGCGCCTGATTGCGTTTGCAGCGGTGGAGGGCATCTTCTTTTCCGGGTCGTTTTGCGCG 109320 Query 46211 CCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGA 46270 | || | | | | | || | || | | ||||| || ||||| || || |||||||||| Sbjct 109321 CTAT-TCTGGCTTAAGAAGCGCGG-CGTGATGCCGGGACTGACCTTCAGTAACGAGCTGA 109378 Query 46271 TATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGC 46330 | || || |||||||| |||| |||||||||||||| ||| || | |||| | | | Sbjct 109379 TCTCACGGGACGAGGGATTGCACACGGACTTTGCGTG--TCTGCT-TTACACGCAC---C 109432 Query 46331 ACGACAAGC-----TTGCGCCCGACAC-CGTGCTGAGCATGTTCAAGGAGGCGGTGGCCA 46384 || ||||| |||| | | | | ||||||| || ||| | | ||||| | || Sbjct 109433 ACATCAAGCACAAGTTGCCGCGGTCGCGCGTGCTGGAGATCATCACGAATGCGGTCGACA 109492 Query 46385 TTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGT 46444 | ||| | ||||| | | ||| ||||| | ||| | || |||||| | || Sbjct 109493 TCGAGCACGAGTTCATCTGCGACGCGCTGCCGGTACGTCTGATTGGGATGAACTCGGAGC 109552 Query 46445 CAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGA 46504 ||| | | |||||||||||||| |||||||| |||||||| |||| | || Sbjct 109553 TGATGGGTCAGTACATCGAGTTTGTCGCGGACCGTCTGCTCGTTGCGCTTGGTGAAGAGA 109612 Query 46505 AGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAA 46564 | | | | || || || ||||| || ||| | | ||||| ||| |||| || | Sbjct 109613 AATACTACAATTCGACAAACCCCTTTGACTTCATGGAGATGATCTCGCTGCAGGGTAAGA 109672 Query 46565 CTAATTTTTTCGAAAAGCGCGTCGGCGAGTATAAG 46599 | || || ||||| ||| | |||||||||||| || Sbjct 109673 CGAACTTCTTCGAGAAGAGGGTCGGCGAGTATCAG 109707 >seq4 Length=877237 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| | |||| || |||||||| || || ||||| || Sbjct 46604 GCCACCACGCAGACGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATATTGTAGTCCGC 46545 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||||||| |||| | ||||||||| ||||| || Sbjct 46544 CAATGTGCGGCCCTCCTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCCGGGGG 46485 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || ||| ||| ||| | | || | |||||| | | ||||| Sbjct 46484 AATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTATCGATCGTATCGCTCGCCTCGAC 46425 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| | | || || || || || || || ||||| |||||||| Sbjct 46424 CTCGAGCGCGATCGTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCAT 46377 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | || | || |||||||| || || ||||| || || ||||| Sbjct 46819 CGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAATGTGCGGCCC 46760 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||||||||||||| |||| | ||||||||| ||||| || || || || || Sbjct 46759 TCCTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCCTCCTTA 46700 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| ||| ||| | | || | |||||| | | ||||| |||| | | Sbjct 46699 TCCTGGATCTTCGCCTTCACATTATCGATCGTATCGCTCGCCTCGACCTCGAGCGCGATC 46640 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || || || || || || || ||||| ||||||||| Sbjct 46639 GTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCATG 46604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011985777920