Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq16 93.3 5e-14 seq2 82.4 9e-11 >seq16 Length=341705 Score = 93.3 bits (102), Expect = 5e-14 Identities = 315/483 (65%), Gaps = 11/483 (2%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 ||||||||||| || || || || ||||| ||||| |||| ||| || ||||| || | Sbjct 109415 CACGCAAAGTCCGTGTGCAATCCCTCGTCCCGTGAGATCAGCTCGTTACTGAAGGTCAGT 109356 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-CCAGaaaaaaa 93210 || || | || || || ||||| ||||| |||| | ||||||| | || ||||| || Sbjct 109355 CCCGGCATCACGCCGCGCTTCTTAAGCCAGAATAGCG-CGCAAAACGACCCGGAAAAGAA 109297 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTC--GGCAAAATTTGCGGAATTACTG 93268 || || ||||| |||||||| || | | || || || || ||| | || Sbjct 109296 GATGCCCTCCACCGCTGCAAACGCAATCAGGCGCTCCTGG---AAGCTGC--TCTCGCTC 109242 Query 93269 CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 | |||||| | ||||| ||||| || |||| ||| ||||||| || | ||| || Sbjct 109241 CCGATCCACCGCACGGCCCACTCGGCCTTCTTCTGAATGCAAGGTATCGTCTGGATCGCA 109182 Query 93329 T-TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 | | || | | || ||| || | ||| | || || || || | | || || || Sbjct 109181 TGCAGCAAGCTTACCT-TCTCATCAGGATCGAGGATATACGTGTCCAACAGCACTGAGTA 109123 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 | || || |||| ||||||||| | || || || ||||| | || |||| Sbjct 109122 GGTCTCCGAGTGGATATTCTCCATCATCAGCTGAAACCCATAGAACGCACGCGCCTCCGG 109063 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 |||| ||| || || | || |||| || || | || ||||| ||| | | Sbjct 109062 TATCTTCACATCAGTCATGAAGCGCTGCGCGAGGTTCTCGATCACGATACCGTCGCTTCC 109003 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCA 93567 ||| || || || | | ||||| || || ||| ||| |||| || ||||| |||| Sbjct 109002 TGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGTCGCTCGCCATCGTTCAGCTTCGCCCA 108943 Query 93568 ATC 93570 || Sbjct 108942 GTC 108940 >seq2 Length=1622300 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/67 (90%), Gaps = 2/67 (3%) Strand=Plus/Plus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332 ||||||||||||||||||||||||||||| | ||||| || ||| | |||||||||||| Sbjct 1074126 TGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGG-TCTTTCGAG-GCGTGGGTTCGA 1074183 Query 126333 ACCCCAC 126339 ||||||| Sbjct 1074184 ACCCCAC 1074190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859839415120