Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq16 141 2e-28 seq8 95.1 2e-14 >seq16 Length=341705 Score = 141 bits (156), Expect = 2e-28 Identities = 268/389 (69%), Gaps = 9/389 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| |||| ||| ||||| | |||||||||||| ||||||||||| Sbjct 109685 TCGAAGAAGTTCGTCTTACCCTGCAGCGAGATCATCTCCATGAAGTCAAAGGGGTTTGTC 109626 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| | || | ||||| || |||| | ||||| || |||||||| | Sbjct 109625 GAATTGTAGTATTTCTCTTCACCAAGCGCAACGAGCAGACGGTCCGCGACAAACTCGATG 109566 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||||| || |||||||| ||||||| ||| || | || || |||||| Sbjct 109565 TACTGACCCATCAGCTCCGAGTTCATCCCAATCAGACGTACCGGCAGCGCGTCGCAGATG 109506 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || | ||| || | || || | | | || || ||| | | | | | || | Sbjct 109505 AACTCGTGCTCGATGTCGACCGCATTCGTGATGATCTCCAGCACGCGCGACCGCGGCAAC 109446 Query 251803 TTGTTCTCCA---GCTTTGAGTACAGGAG-CTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| || | | | | ||| || || | || |||| | ||||| |||||||| Sbjct 109445 TTGTGCTTGATGTGGTGCGTGTAAAGCAGACACG-CAAAGTCCGTGTGCAATCCCTCGTC 109387 Query 251859 GCGACTGATGAACTCGTTGGACAGA--CCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 || ||| | |||||| || || ||| || |||||||| || || ||| | ||| Sbjct 109386 CCGTGAGATCAGCTCGTT--ACTGAAGGTCAGTCCCGGCATCACGCCGCGCTTCTTAAGC 109329 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAA 251945 ||||| | |||||||| || || || || Sbjct 109328 CAGAATAGCGCGCAAAACGACCCGGAAAA 109300 >seq8 Length=550273 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 217836 CTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGC 217895 |||||| ||||| || |||||||||||||| || ||||| ||||| |||||||| Sbjct 102584 CTGCACACTCATTCTTACAGAGGGAGACTCTGCCAAGACGCTTTGCACCGCCGGTCTTGC 102525 Query 217896 CGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCG 217955 |||| || ||| || | ||| ||||||| || ||||| |||| ||||||||| || Sbjct 102524 CGTGAAGGATCGCGACTATTTTGGAGTCTTCCCGCTGCGTGGCAAGCCGCTCAACGTACG 102465 Query 217956 CGATGCCTCG 217965 || |||||| Sbjct 102464 GGACGCCTCG 102455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834982656058