Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq16 159 6e-34 seq4 118 2e-21 seq19 87.8 3e-12 seq12 87.8 3e-12 >seq16 Length=341705 Score = 159 bits (176), Expect = 6e-34 Identities = 595/912 (65%), Gaps = 62/912 (7%) Strand=Plus/Minus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| || ||||||||||| ||||| |||| |||||||||||| | ||| |||| Sbjct 109723 TCATCACACCCGCCTTCTGATACTCGCCGACCCTCTTCTCGAAGAAGTTCGTCTTACCCT 109664 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAA----ACTGCTTGGGG 10049 || || || | ||||||||||||||||||||| | || || | | || Sbjct 109663 GCAGCGAGATCATCTCCATGAAGTCAAAGGGGTTT--GTCG--AATTGTAGTATTTCTCT 109608 Query 10050 TAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCC 10109 | ||| || || || | ||||| || || |||||||||||||| | |||||| ||| Sbjct 109607 TCACCAAGCGCAACGAGCAGACGGTCCGCGACAAACTCGATGTACTGACCCATCAGCTCC 109548 Query 10110 GAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCG 10169 |||||||| ||||||| || || | |||||||| ||||| || | ||| || || Sbjct 109547 GAGTTCATCCCAATCAGACGTACCGGCAGCGCGTCGCAGATGAACTCGTGCTCGATGTCG 109488 Query 10170 ACCGCTTCCTCGACGATGCTCTTTACCACGT-CAA--GGGACAGCTTGTTCTCGA---GC 10223 ||||| | ||| |||| ||| | |||| | | | | || ||||| || || | Sbjct 109487 ACCGCAT--TCGT-GATGATCTCCAGCACGCGCGACCGCGGCAACTTGTGCTTGATGTGG 109431 Query 10224 TTCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCG 10283 | || || || || |||| | | ||| | |||||||| || ||| | |||| Sbjct 109430 TGCGTGTAAAGCAGACACGCAAAGTCCGTGTGCAATCCCTCGTCCCGTGAGATCAGCTCG 109371 Query 10284 TTGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAAC 10343 || || ||| || ||||| | || || || |||||||| | ||||| ||| Sbjct 109370 TTACTGAAGGTCAGTCCCGGCATCACGCCGCGCTTCTTAAGCCAGAATAGCGCGCAAAAC 109311 Query 10344 GACCCGGAGAACAGAAGA--CCCTCCAC----GCACACCCAGGCGACGAGGCGCTCTGCG 10397 |||||||| || ||||| |||||||| ||| || || | |||||||| | Sbjct 109310 GACCCGGAAAA--GAAGATGCCCTCCACCGCTGCAAACGCAATC----AGGCGCTCCTGG 109257 Query 10398 AAGGAGCGGTCGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGG 10457 ||| || |||| | | | | ||||||| | |||||||| | | ||| Sbjct 109256 AAGCTGCTCTCGCTCCCGATCCACCGCACGGCCCACTCGGCCTTCTTCTGAATGCAAGGT 109197 Query 10458 ATCGTCTCGATAGCCTCGAAG--AGCTTGTTACGCTCGGTCTCGTCCTCA------ATAA 10509 ||||||| ||| || | | || ||||| || || |||| || | ||| Sbjct 109196 ATCGTCTGGATCGCAT-GCAGCAAGCTT---AC-CT---TCTCATCAGGATCGAGGATAT 109145 Query 10510 GAGCATCAAGGAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAG 10569 | || | |||| ||||| ||| ||||| |||| | | ||| | Sbjct 109144 ACGTGTCCAACAGCACTGAGTAGGTCTCCGAGTGGATATTCTCCATCATCAGCTGAAACC 109085 Query 10570 CGTAGAACATACGTGCCGAGGGGTCCGTGACTTCCTCGGCA--AAGTTGTTGTTC-AGGT 10626 | |||||| ||| ||| || | | || || | || ||| | || | |||| Sbjct 109084 CATAGAACGCACGCGCCTCCGGTATCTTCACATCA--GTCATGAAGC-GCTGCGCGAGGT 109028 Query 10627 TCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGC 10686 |||| ||||| || || ||||| ||||| |||||| | || | ||||||||||||||| | Sbjct 109027 TCTCGATCACGATACCGTCGCTTCCTGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGTC 108968 Query 10687 GCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCT 10746 |||| |||||||||| || | |||||| |||| || | || | || ||||| Sbjct 108967 GCTCGCCATCGTTCAGCTTCGC---CCAGTCCACCATGTCGCTGCCCAGATCGATCTCCT 108911 Query 10747 CCACGGTCCAGAAAGTGGCAACGGCCTT----CTTGTACATCTGGAAAATGTCGGGGTAC 10802 |||| ||||||| ||| | ||| ||||||| | | | |||||| ||||| Sbjct 108910 CCACCGTCCAGA----TGCAGCTCTCTTGCTCCTTGTACTTGCGCCAGATGTCGTGGTAC 108855 Query 10803 CGGATGGGGAAC 10814 |||| |||||| Sbjct 108854 TGGATCGGGAAC 108843 >seq4 Length=877237 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| ||||||||||||||| || ||||| || || || | Sbjct 46603 CCACCACGCAGACGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATATTGTAGTCCGCC 46544 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | || || || | |||||| || ||||| || || | || || || || ||| Sbjct 46543 AATGTGCGGCCCTCCTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCCGGGGGA 46484 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| ||||| || || ||||| ||||| || ||||| || || ||| | || || Sbjct 46483 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTATCGATCGTATC-GCTCGCCTCGAC 46425 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | | ||| || || || || || ||||| ||||| ||||||||| Sbjct 46424 CTCGAGCGCGATCGTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCATT 46376 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| ||||||||||| || ||||| || || || | | ||| | Sbjct 46822 AGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAATGTGCGG 46763 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || || || | |||||| || ||||| || || | || || || || |||||||| ||| Sbjct 46762 CCCTCCTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCCTCC 46703 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 || || || ||||| ||||| || ||||| || || ||| | || || || | | Sbjct 46702 TTATCCTGGATCTTCGCCTTCACATTATCGATCGTATC-GCTCGCCTCGACCTCGAGCGC 46644 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || || || || || ||||| ||||| |||||||| Sbjct 46643 GATCGTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCAT 46605 >seq19 Length=250472 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 173845 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 173902 >seq12 Length=427366 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 339378 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 339321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620810201360