Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq16 257 3e-63 >seq16 Length=341705 Score = 257 bits (284), Expect = 3e-63 Identities = 595/874 (68%), Gaps = 27/874 (3%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || |||| ||||||||| || ||||||| || || || || |||||| | Sbjct 108849 GATCCAGTACCACGACATCTGGCGCAAGTACAAGGAGCAAGAGAGCTGCATCTGGACGGT 108908 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA----GAACG 42399 |||||||| || |||| || |||| || | ||||| | ||| || || || Sbjct 108909 GGAGGAGATCGATCTGGGCAGCGACATGGTGGACTGGGCGAAGCTGAACGATGGCGAGCG 108968 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | | ||| |||| || | || ||||||||||| | ||||| || || | | Sbjct 108969 ACAC----TTCATCAAGCACGTGCTTGCCTTCTTCGCAGGAAGCGACGGTATCGTGATCG 109024 Query 42460 AGAACCTGGC-CACCAGGTTCATGAAAGAGGTGCAG-TACTTTGAGGCGCGCTGC-TTCT 42516 ||||||| || || | | ||||||| || ||| || ||| |||||||| ||| |||| Sbjct 109025 AGAACCTCGCGCAGC-GCTTCATGACTGATGTGAAGATACCG-GAGGCGCG-TGCGTTCT 109081 Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACA 42576 | || || ||| | || ||||| | ||||| ||| ||| | ||| | ||| Sbjct 109082 ATGGGTTTCAGCTGATGATGGAGAATATCCACTCGGAGACCTACTCAGTGCTGTTGGACA 109141 Query 42577 CGTACATCCTGGATCCCGTCGAGC--GTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 |||| ||||| ||||| | ||| |||| | || | | || || ||||||| || Sbjct 109142 CGTATATCCTCGATCCTGATGAGAAGGTAA--GCTTGCTGCATGCGATCCAGACGATACC 109199 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694 ||||| |||||||||| || ||||| | ||||||| ||| | || ||| | | Sbjct 109200 TTGCATTCAGAAGAAGGCCGAGTGGGCCGTGCGGTGGATCGGGAG-CGAGA-GCAGCTTC 109257 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754 | | ||| | ||| | || ||| | || || |||||||||||||| || || | || Sbjct 109258 CAG-GAGCGCCTGATTGCGTTTGCAGCGGTGGAGGGCATCTTCTTTTCCGGGTCGTTTTG 109316 Query 42755 CTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 | | | |||||||| ||| || || || |||||| ||||| |||||| ||||| | Sbjct 109317 CGCGCTATTCTGGCTTAAGAAGCGCGGCGT-GATGCCGGGACTGACCTTCAGTAACGAGC 109375 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACC 42873 | ||| |||||||||| |||| | ||||||||| || || || | | || |||| Sbjct 109376 TGATCTCACGGGACGAGGGATTGCACACGGACTTTGCGTGTCTGCTTTACACGCACCACA 109435 Query 42874 TCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCG 42933 ||| ||||||| || | ||| || | || ||||||||| | || || || |||| Sbjct 109436 TCAAGCACAAGTTGCCGCGGTCGCGCGTGCTGGAGATCATCACGAATGCGGTCGACATCG 109495 Query 42934 AGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCA 42993 || | |||||| || | ||||||| || ||| | || |||||| || || | Sbjct 109496 AGCACGAGTTCATCTGCGACGCGCTGCCGGTACGTCTGATTGGGATGAACTCGGAGCTGA 109555 Query 42994 TGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGC 43052 || | |||||||| ||| ||||| |||| ||| || || | | | ||| || Sbjct 109556 TGGGTCAGTACATCGAGTTTGTCGCGGACCGTCTGCTCGTTGC-GCTTGGT-GAAGAGAA 109613 Query 43053 CT-CTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGAC 43111 | |||||| || | |||||| ||||| ||||||| |||||| || |||| ||||| Sbjct 109614 ATACTACAATTCGACAAACCCCTTTGACTTCATGGAGATGATCTCGCTGCAGGGTAAGAC 109673 Query 43112 CAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||| ||||||||| | |||| ||| || ||| Sbjct 109674 GAACTTCTTCGAGAAGAGGGTCGGCGAGTATCAG 109707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337571014880