Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq4 104 2e-17 >seq4 Length=877237 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 |||| |||||||| || |||||||| || |||||| ||||||||| || ||||| || | Sbjct 46833 AACCGCCTCTCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCG 46774 Query 33959 CCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||||| || | || |||| |||||||| || || ||||| |||||||||||| | Sbjct 46773 CCAATGTGCGGCCCTCCTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCCGGGG 46714 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || ||| || ||| Sbjct 46713 GAATGCCCTCCTTATCC 46697 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || |||||| ||||||||| || ||||| || ||| Sbjct 46603 CCACCACGCAGACGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATATTGTAGTCCGCC 46544 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| || | || |||| |||||||| || || ||||| |||||||||||| || Sbjct 46543 AATGTGCGGCCCTCCTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCCGGGGGA 46484 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | || ||| || ||| || || ||| | | | |||| | | ||| Sbjct 46483 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTATCGATCGTATCGCTCGCCTCGACC 46424 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 |||| || || || || || || ||||| ||||| ||||| |||||| Sbjct 46423 TCGAGCGCGATCGTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCATT 46376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397061732190676