Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4 163 7e-35 seq16 105 2e-17 >seq4 Length=877237 Score = 163 bits (180), Expect = 7e-35 Identities = 184/244 (75%), Gaps = 7/244 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || || | |||| || || |||||||| |||| Sbjct 46607 CATG-CCACCACGCAGACGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATATTGTAGT 46549 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || | ||||| || || || | || || |||||||||||||||||||| ||| | Sbjct 46548 CCGCCAATGTGCGGCCCTCCTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGA---T 46492 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || || || ||||||||||| ||||| ||||| || || || | |||||||| Sbjct 46491 CCGGGGGAATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTATCGATCGTATCGCTCG 46432 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 || || ||||||| ||||||||| || ||||| ||||| ||||| ||||||||| | | Sbjct 46431 CCTCGACCTCGAGCGCGATCGTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCATTGTAT 46372 Query 288479 TATT 288482 | || Sbjct 46371 TCTT 46368 Score = 154 bits (170), Expect = 3e-32 Identities = 164/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || || || | |||| || || |||||||| ||||| || | ||||| || || Sbjct 46816 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAATGTGCGGCCCTCC 46757 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || |||||||||||||||||||| ||| || ||| || || || ||| Sbjct 46756 TCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGA---TCCGGGGGAATGCCCTCCTTA 46700 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| ||||| ||||| || || || | |||||||| || || ||||||| |||| Sbjct 46699 TCCTGGATCTTCGCCTTCACATTATCGATCGTATCGCTCGCCTCGACCTCGAGCGCGATC 46640 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| ||||| |||||||| Sbjct 46639 GTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCAT 46605 >seq16 Length=341705 Score = 105 bits (116), Expect = 2e-17 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTC-TATGATCGGTATGAATGCCGATCTCATGAA 269177 |||||||| || ||||| | || || | | |||| || ||||| | || || ||| Sbjct 109501 GAGTTCATCTGCGACGCGCTGCCG-GTACGTCTGATTGGGATGAACTCGGAGCTGATGGG 109559 Query 269178 TCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTA 269237 ||| || ||||| || || || || ||| | || || || ||| | |||||| || Sbjct 109560 TCAGTACATCGAGTTTGTCGCGGACCGTCTGCTCGTTGCGCTTGGTGAAGAGAAATACTA 109619 Query 269238 CAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTT 269297 |||||||| || ||||| | ||| ||||| | || ||||| | || ||||||||||| Sbjct 109620 CAATTCGACAAACCCCTTTGACTTCATGGAGATGATCTCGCTGCAGGGTAAGACGAACTT 109679 Query 269298 CTTCGAAAAGCGTGTCAGCGACTATCA 269324 |||||| ||| | ||| |||| ||||| Sbjct 109680 CTTCGAGAAGAGGGTCGGCGAGTATCA 109706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652314223564