Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq16 125 9e-24 seq9 107 2e-18 >seq16 Length=341705 Score = 125 bits (138), Expect = 9e-24 Identities = 352/530 (66%), Gaps = 18/530 (3%) Strand=Plus/Minus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818 || || || |||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 109703 TACTCGCCGACCCTCTTCTCGAAGAAGTTCGTCTTACCCTGCAGCGAGATCATCTCCATG 109644 Query 125819 AAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGAGAC 125876 || ||||| ||||| | || || | | || | |||| || | ||| |||| Sbjct 109643 AAGTCAAAGGGGTTTGTCGAATTGTAGTATTTCTCTTCACC--AAGCGCAACGAGCAGAC 109586 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT-TA 125935 | |||| ||| |||| ||||||| | |||| ||| |||||||| || || || || Sbjct 109585 GGTCCGCGACAAACTCGATGTACTGACCCATCAGCTCCGAGTTCATCCCAATCAGACGTA 109526 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 | || |||||||| |||||||| | | ||| || || || || | | | ||| | Sbjct 109525 CC-GGCAGCGCGTCGCAGATGAACTCGTGCTCGATGTCGACCGCATTCGTGATGATCTCC 109467 Query 125996 TGAATG-GTGTCCACCCCAGGTCTATTGCGCAAAGT----CTTGAAGAGTTC-CACGGCA 126049 | | | | | || | || || ||| | || | || | || |||| || Sbjct 109466 AGCACGCGCGACCGCGGCAA--CTTGTGCTTGATGTGGTGCGTGTAAAGCAGACACG-CA 109410 Query 126050 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGC 126109 || || ||| | |||||||| || ||||| || || || |||| |||||| ||| Sbjct 109409 AAGTCCGTGTGCAATCCCTCGTCCCGTGAGATCAGCTCGTTACTGAAGGTCAGTCCCGGC 109350 Query 126110 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCC 126169 || | || |||||||| | |||||| | ||| ||||| || || || |||||||| ||| Sbjct 109349 ATCACGCCGCGCTTCTTAAGCCAGAATAGCGCGCAAAACGACCCGGAAAAGAAGATGCCC 109290 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCAC 126229 ||||| || ||||||| || ||||| ||| || | | | | | |||| Sbjct 109289 TCCACCGCTGCAAACGCAATCAGGCGCTCCTGGAAGCTGCTC---TCGCTCCCGATCCAC 109233 Query 126230 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 || ||||||| ||||| |||| || || || | ||||||||||| Sbjct 109232 CGCACGGCCCACTCGGCCTTCTTCTGAATGCAAGGTATCGTCTGGATCGC 109183 >seq9 Length=527489 Score = 107 bits (118), Expect = 2e-18 Identities = 227/335 (68%), Gaps = 8/335 (2%) Strand=Plus/Plus Query 114277 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 114336 |||||| ||| ||||||||||||||||| | ||||||||||||| | | ||| Sbjct 426598 AATAAAAGTATCTGCGAGACCTTGGACACCTATTCCAATTGGGCGATAATTTACGTTACT 426657 Query 114337 CTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGT 114396 | | || ||||| || ||||| | ||||||| || | || || || | ||| Sbjct 426658 TCTCCTTGCAGTCTCTACCGGATAGTAGGAATTATCGATCACGCGGTTCAGGTTGTAGGT 426717 Query 114397 GACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA--CTGCGAGTCTCTTCA--T 114452 || | || || | ||| | || ||||| || ||| |||| || ||||| | Sbjct 426718 TACTTCTTTCGTTACTTCGTAGAGAAGTTCGTGATTAAAGGTCTGC---TC-CTTCACGT 426773 Query 114453 TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAG 114512 | ||| | || ||||||| ||||||| || ||||| | || || | | Sbjct 426774 TTACAAATCGCGGCAGGGCGACAGACGCCAAGTTGCACACCGCTGTTTCGTTAGGGGACG 426833 Query 114513 TGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 114572 ||||||| ||||| || || || || || || | ||||| ||||| | | || || | Sbjct 426834 TGTACTCAATAATCTCAGTGCATAAGTTGGAGCATTTAATCGTGCCAATATGTTTCTGGT 426893 Query 114573 TTGACTTTGTGTTACACGCATCCTTGTAAAGCATG 114607 | |||||| ||||||||||||||||||| |||||| Sbjct 426894 TCGACTTTTTGTTACACGCATCCTTGTAGAGCATG 426928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597352569565040