Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq16 178 1e-39 seq9 123 2e-23 >seq16 Length=341705 Score = 178 bits (196), Expect = 1e-39 Identities = 368/539 (68%), Gaps = 9/539 (2%) Strand=Plus/Plus Query 52306 TGCTGAATGCGTTCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAG 52364 ||||| ||||| || || ||| | || ||| ||| || ||||| ||||||| || | Sbjct 109175 TGCTGCATGCGATCCAG-ACGATACCTTGCATTCAGAAGAAGGCCGAGTGGGCCGTGCGG 109233 Query 52365 TGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAG 52424 ||||||| |||||| | | | | || ||||| || | || || || || ||| Sbjct 109234 TGGATCGGGAGCGAGAGCAGCTTCCAGG---AGCGCCTGATTGCGTTTGCAGCGGTGGAG 109290 Query 52425 GGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATG 52484 ||| | || |||||||| ||| ||| | || | |||| | | ||| | ||| Sbjct 109291 GGCATCTTCTTTTCCGGGTCGTTTTGCGCGCTATTCTGGCTTAAGAAGCGCGGCGTGATG 109350 Query 52485 CCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTT 52544 || || ||||| ||||| |||||| |||| || || ||||| ||| |||||||||||||| Sbjct 109351 CCGGGACTGACCTTCAGTAACGAGCTGATCTCACGGGACGAGGGATTGCACACGGACTTT 109410 Query 52545 GCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACG-ATCCTGAG 52603 ||||| || |||| | | | | | | | || | | ||| | || | ||| Sbjct 109411 GCGTGTCTGCTTTACACGCACCACATCA-AGCACAAGTTGCCGCGGTCGCGCGTGCTGGA 109469 Query 52604 CATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGA 52663 || ||| | | ||||| | ||||| | ||||| | | |||||||||||| Sbjct 109470 GATCATCACGAATGCGGTCGACATCGAGCACGAGTTCATCTGCGACGCGCTGCCGGTACG 109529 Query 52664 GCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCT 52723 ||| | || |||||| || || ||| | |||||||||||||||| ||||| ||||| Sbjct 109530 TCTGATTGGGATGAACTCGGAGCTGATGGGTCAGTACATCGAGTTTGTCGCGGACCGTCT 109589 Query 52724 GTTGGTGCAGCTCGG-GCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGA 52782 | | || ||| || | || ||| |||| ||| | || || ||||| || ||| Sbjct 109590 GCTCGTTGCGCTTGGTGAAGAGAAA-TACTACAATTCGACAAACCCCTTTGACTTCATGG 109648 Query 52783 ACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841 | | || ||||| |||| ||||| ||||| ||||||||| | |||||||||||| || Sbjct 109649 AGATGATCTCGCTGCAGGGTAAGACGAACTTCTTCGAGAAGAGGGTCGGCGAGTATCAG 109707 >seq9 Length=527489 Score = 123 bits (136), Expect = 2e-23 Identities = 536/827 (65%), Gaps = 37/827 (4%) Strand=Plus/Plus Query 153317 AGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTC 153376 |||||| | |||| |||| || ||||| || ||||| || |||||||| | || Sbjct 426511 AGCCTCAACCGCGGCATAATAGATGGTCTCAAAGATTTCTTCATTGAGAATCATTGATTT 426570 Query 153377 TTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGAC 153436 ||| | | ||||| ||| || || | ||| | || || ||||| |||| ||| | Sbjct 426571 TTCACATGTGAACGGCTGGCGTAGGAGAATAAAAGTATCTGCGAGACCTTGGACACCTAT 426630 Query 153437 GCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGT--GATTG 153494 || || || |||| || |||| || | ||| || || ||| ||||||| || | Sbjct 426631 TCCAATTGGGCGATAATTTACGTTACTTCTCCTTGCAGTCTCTACCGGATAGTAGGAATT 426690 Query 153495 CGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCG 153554 |||||| | ||| |||||| || |||| |||| | | || ||| Sbjct 426691 --ATCGATCACGCGGTTCAGGTTGTAGGTTACTTCTTTCGTTACTTCGTAGAGAAGTTCG 426748 Query 153555 AAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTA 153614 || | ||||| || | ||| ||| |||| || ||| | |||||||| || Sbjct 426749 TGATTAAAGGTCTGCTCCTTCACGTTTACAAATCGCGGCAGGGCGACAGACGCCAAGTTG 426808 Query 153615 CAGACGGCCGTCTC-TTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCA 153673 || || || || || || || | || |||||| | ||||| | ||| | |||| ||| Sbjct 426809 CACACCGCTGTTTCGTTAGGGGACG-TGTACTCAATAATCTCAGTGCATAAGTTGGAGCA 426867 Query 153674 TTTTATGACGCCCAAATTTTGCTGATT-GCTTTTGCGATTGCACGCGTCTTTGAAGAGCA 153732 ||| || ||| | || || ||| || | ||| | || ||||| || ||| |||||| Sbjct 426868 TTTAATCGTGCCAATATGTTTCTGGTTCGACTTTTTG-TTACACGCATCCTTGTAGAGCA 426926 Query 153733 TGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCG 153789 || |||| | || || |||| || || || | || ||||| || ||||| | Sbjct 426927 TGAACGGAACACCCGTTTCGATCTGAGTCTCTAAAATGGCAAACCA---CAATTCCTGTG 426983 Query 153790 CTCGCACCCGCTGCCGATAGCGGCCC-----TCGCTCT-CGTATCGCTCGTACAGTCGCT 153843 || | | | ||| || | ||| | ||| |||| | ||||||| || | Sbjct 426984 CTTGGATCG--TGCG--TACC--CCCATATTTTTTTCTTCGTAACTTTCGTACAAGCGTT 427037 Query 153844 CAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACAC-TGATGCGGACACATCAGCGAC 153902 |||| || | || ||||||||| ||| || || ||| || | ||| ||| |||| | Sbjct 427038 CAAAATCTTTCCCATAGCAGTCGCTGAGTCCCGGGCACGTGCAG-GGATCCATTAGCGTC 427096 Query 153903 CACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATG 153962 || | | | || || || ||| || ||||| || | ||| || |||| | | Sbjct 427097 CAAGTTTTCTGATTCTTTACACGCTCCATAAAGAGATCAGGAATCCAAAGGCCGTAGAAG 427156 Query 153963 AGGTCGCGCGCC--TTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCA-CGCTA 154019 || |||||||| ||| ||||||| ||| |||| || ||||| | | | | | | Sbjct 427157 AGATCGCGCGCACGTTG--ATCCTCCTTACCCGTGTTACGCTTCAGCATCACAAACTCGA 427214 Query 154020 TAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTTCCGCC- 154078 | ||||| || ||||| || || | ||| | || | ||| || || ||||| ||||| Sbjct 427215 AA-ATGTCAGCATGCCATGGCTCCAGGTATATCGCAAAGGCGCCCTTGCGCTTGCCGCCA 427273 Query 154079 --CTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGG 154123 ||||||||||| ||| | | |||||||| || |||| ||| || Sbjct 427274 CCCTGATCGACGTAGCGGGCGGTGTTGTTGAAAACACGCAGCATAGG 427320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261543947360