Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq16 129 7e-25 seq9 114 2e-20 >seq16 Length=341705 Score = 129 bits (142), Expect = 7e-25 Identities = 353/530 (67%), Gaps = 18/530 (3%) Strand=Plus/Minus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || ||||||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 109703 TACTCGCCGACCCTCTTCTCGAAGAAGTTCGTCTTACCCTGCAGCGAGATCATCTCCATG 109644 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGAGAC 127349 || ||||| ||||| | || || | | || | |||| || | ||| |||| Sbjct 109643 AAGTCAAAGGGGTTTGTCGAATTGTAGTATTTCTCTTCACC--AAGCGCAACGAGCAGAC 109586 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT-TA 127408 | |||| ||| |||| ||||||| | |||| ||| |||||||| || || || || Sbjct 109585 GGTCCGCGACAAACTCGATGTACTGACCCATCAGCTCCGAGTTCATCCCAATCAGACGTA 109526 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 | || |||||||| |||||||| | | ||| ||||| || || | | | ||| | Sbjct 109525 CC-GGCAGCGCGTCGCAGATGAACTCGTGCTCGATGTCGACCGCATTCGTGATGATCTCC 109467 Query 127469 TGAATA-GTGTCCACCCCAGGTCTATTGCGTAAAGT----CTTGAAGAGTTCCACA-GCA 127522 | | | | || | || || ||| | | || | || | || ||| ||| Sbjct 109466 AGCACGCGCGACCGCGGCAA--CTTGTGCTTGATGTGGTGCGTGTAAAGCAG-ACACGCA 109410 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| | |||||||| || ||||| || || || |||| ||| || ||| Sbjct 109409 AAGTCCGTGTGCAATCCCTCGTCCCGTGAGATCAGCTCGTTACTGAAGGTCAGTCCCGGC 109350 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 || | || |||||||| | |||||| | ||| ||||| || || || |||||||| ||| Sbjct 109349 ATCACGCCGCGCTTCTTAAGCCAGAATAGCGCGCAAAACGACCCGGAAAAGAAGATGCCC 109290 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCAC 127702 ||||| || ||||||| || ||||| ||| || || | | | |||| Sbjct 109289 TCCACCGCTGCAAACGCAATCAGGCGCTCCTGGAAGCTGCT---CTCGCTCCCGATCCAC 109233 Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 || ||||||| ||||| |||| || || || | ||||||||||| Sbjct 109232 CGCACGGCCCACTCGGCCTTCTTCTGAATGCAAGGTATCGTCTGGATCGC 109183 >seq9 Length=527489 Score = 114 bits (126), Expect = 2e-20 Identities = 650/1026 (63%), Gaps = 29/1026 (3%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATA-TGCATTGAGGA 115616 || ||||||||||| ||||||||||| ||||| | |||| || | | | ||||| || | Sbjct 425915 CGAAGGTAGTACATGCCCGTCTTGAGGCCCTGTTCCCAG-CAGAAAAAGTGCATGGACGT 425973 Query 115617 CAACTTGG-AGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGA 115675 | | |||| | ||||| |||||||||||||| | | ||||| || |||||| Sbjct 425974 TATGCGGCCAGAG-GAAGGACTCTCCATGAAGAGGTTTAGAGACTGGGACTGGTCGATGT 426032 Query 115676 AGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTC 115735 | ||| || || | ||||| || || | | | | || ||||| || || | Sbjct 426033 ACTTTCCGCGGTCAACAGCCATTTCGATTATCCGCCGCTGCGAAATCTCCCAGACGGTCC 426092 Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCT 115795 ||||||| | ||| | || | || || || || ||| |||||||| | Sbjct 426093 TGTAGAGCTCCTTGAGGTCCTTCGGAATTTCTTTGACGGATTGAATAGAGCCG------T 426146 Query 115796 TGACCATGAGA---TCCTT-CATATCCTTTGA--CCAGAGACCAATCTTCTTGAGATCCT 115849 ||| | | | || || | || | | | ||| | || || | ||||| Sbjct 426147 TGAAAGTAATAATCTCATTGCGAATAGTGTCATTCCACATCCCGCGCTCGATCAGATCAC 426206 Query 115850 CCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGT 115909 ||| |||| || || |||||| |||||| || || || | ||| || || | Sbjct 426207 GCACCAGGTATTTGTTCACAACAGGAAACTCTCCGCTTAGAACACGACGCAGGTAAATAT 426266 Query 115910 TGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGG 115969 | | || | |||||||| ||||||||||| ||||||||||| | ||| || || || | Sbjct 426267 TTGATGTAAAGGGCTCAAAACACTCATTGTTGCCCAAGATTTGCGATGTTGACGCGGTCG 426326 Query 115970 GCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGG 116029 ||||||| |||| || | |||||| | || | | ||| ||||| || | Sbjct 426327 GCATGGGCGCCAACAGTAAAGAGTTGCGCATGCCTGAAGATTTGACGCGCTCCTTAAGAG 426386 Query 116030 CGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATAC 116086 | ||||| | | |||| ||| | || |||||| | || ||||| || |||| Sbjct 426387 CATCCCAATTCCATCGGTTGCTCTTGGGCTTTTTCTCCCATAAGTCGAACTGCAGTATAC 426446 Query 116087 CTTGGGACGCTGG-CGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG 116145 | |||| || || | | || || | | || | || || ||| || | || Sbjct 426447 CCTGGGCAGCGGGACTTTTGCTGAAGTCGGTG-TACGCCCCTTCCTTCTCAGCAAGATCT 426505 Query 116146 GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG 116205 ||||| | || || | ||| || |||||||| || |||| | | | Sbjct 426506 ACCGAAGCCTCAACCGCGGCATAATAGATGGTCTCAAAGATTTCTTCATTGAGAATCATT 426565 Query 116206 GCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACA 116265 | | || | |||| | || | |||||| ||| ||||||||||||||| Sbjct 426566 GATTTTTCACATGTGAACGGCTGGCGTAGGAGAATAAAAGTATCTGCGAGACCTTGGACA 426625 Query 116266 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAA 116325 || | ||||||||||||| | | ||| | | || ||||| || ||||| | Sbjct 426626 CCTATTCCAATTGGGCGATAATTTACGTTACTTCTCCTTGCAGTCTCTACCGGATAGTAG 426685 Query 116326 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 116385 ||||||| || | || || || | ||| || | || || | ||| | || | Sbjct 426686 GAATTATCGATCACGCGGTTCAGGTTGTAGGTTACTTCTTTCGTTACTTCGTAGAGAAGT 426745 Query 116386 TCGTAATCAAAA--CTGCGAGTCTCTTCA--TTGACATACTTAGGAAGGGCGATTGACGC 116441 |||| || ||| |||| || ||||| || ||| | || ||||||| ||||| Sbjct 426746 TCGTGATTAAAGGTCTGC---TC-CTTCACGTTTACAAATCGCGGCAGGGCGACAGACGC 426801 Query 116442 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 116501 || || ||||| | || || | |||||||| ||||| || || || || || Sbjct 426802 CAAGTTGCACACCGCTGTTTCGTTAGGGGACGTGTACTCAATAATCTCAGTGCATAAGTT 426861 Query 116502 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 116561 || | ||||| ||||| | | || || || |||||| ||||||||||||||||||| Sbjct 426862 GGAGCATTTAATCGTGCCAATATGTTTCTGGTTCGACTTTTTGTTACACGCATCCTTGTA 426921 Query 116562 GAGCAT 116567 |||||| Sbjct 426922 GAGCAT 426927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506141700080