Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4 123 6e-23 >seq4 Length=877237 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| |||||||| ||||| || Sbjct 46597 CGCAGACGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAATGTG 46538 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || |||||||| ||||||||||| ||||| ||| || Sbjct 46537 CGGCCCTCCTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCC 46478 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| || || | | || || || | | Sbjct 46477 TCCTTATCCTGGATCTTCGCCTTCACATTATCGATCGTATCGCTCGCCTCGACCTCGAGC 46418 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||||||| || || || || ||||| || || || Sbjct 46417 GCGATCGTCTTGCCTGTCAGTGTCTTCACGAAGATCTG 46380 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || |||||||| |||| |||||||| ||||| || | || || Sbjct 46816 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAATGTGCGGCCCTCC 46757 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || |||||||| ||||||||||| ||||| ||| || || ||| Sbjct 46756 TCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCC 46697 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| || || | | || || || | || ||||||| Sbjct 46696 TGGATCTTCGCCTTCACATTATCGATCGTATCGCTCGCCTCGACCTCGAGCGCGATCGTC 46637 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 46636 TTGCCTGTCAGTGTCTTCACGAAGATCTG 46608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178919515519246