Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq16 280 1e-70 seq4 111 2e-19 >seq16 Length=341705 Score = 280 bits (310), Expect = 1e-70 Identities = 620/914 (68%), Gaps = 22/914 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 |||||| || || ||||| ||||| ||| | ||||| || || || || || |||| Sbjct 109722 CATCACACCCGCCTTCTGATACTCGCCGACCCTCTTCTCGAAGAAGTTCGTCTTACCCTG 109663 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || || | | ||| || || |||||||| | | ||||||| || | Sbjct 109662 CAGCGAGATCATCTCCATGAAGTCAAAGGGGTTTGTCGAATTGTAGTATTTCTCTTCACC 109603 Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770 || | |||||||| | ||| || || ||||||||||| || ||| || | || Sbjct 109602 AAGCGCAACGAGCAGACGGTCCGCGACAAACTCGATGTACTGACCCATCAGCTCCGAGTT 109543 Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCG 132829 | || | |||||| ||||||||||| ||| || ||| ||| |||||||| |||||| Sbjct 109542 CATCCCAATCAGACGTACCGGCAGCGCGTCGCAGATGAACTCGT-GCTCGATGTCGACCG 109484 Query 132830 CGTCGGTGACGATTTCCCTAACGCGCG-CCGCG----CTCGGCCGTTGCACCAAATGCTT 132884 | | |||| ||| ||| ||||||| ||||| || | | ||| | ||| | Sbjct 109483 CATTCGTGATGATCTCCAGCACGCGCGACCGCGGCAACTTGTGC-TTG-ATGTGGTGCGT 109426 Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 | | | || || |||||||| ||||| |||||||||| || || || ||||| || Sbjct 109425 GTAAAGCAGACACGCAAAGTCCGTGTGCAATCCCTCGTCCCGTGAGATCAGCTCGTTACT 109366 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| |||| || ||||| | |||||| || || ||||| |||| ||| | |||| || Sbjct 109365 GAAGGTCAGTCCCGGCATCACGCCGCGCTTCTTAAGCCAGAATAGCGCG-CAAAACGACC 109307 Query 133005 CG-AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 || ||||||||| |||||| || || || || || | ||||||||| ||| ||| Sbjct 109306 CGGAAAAGAAGATGCCCTCCACCGCTGCAAACGCAATCAGGCGCTCCTGGAA----GCTG 109251 Query 133064 CTTT-GCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122 || | ||| ||||||| |||| ||||| |||||||| | | | ||| || ||||| Sbjct 109250 CTCTCGCTCCCGATCCACCGCACGGCCCACTCGGCCTTCTTCTGAATGCAAGGTATCGTC 109191 Query 133123 TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGA 133180 | ||| || | || ||| | | ||||| || |||| || | || ||||| | | Sbjct 109190 TGGATCGCATGCAGCAAGCTTACCTTCTCATC--AGGATCGAGGATATACGTGTCCAACA 109133 Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAA-GCAC 133239 | || || | |||||||| | |||||||| | ||||| || || || |||| Sbjct 109132 GCACTGAGTAGGTCTCCGAGTGGATATTCTCCATCATCAGCTGAAACCCATAGAACGCAC 109073 Query 133240 CGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATG 133299 ||||||| | || ||| || ||| |||| | || || ||| | ||||| Sbjct 109072 -GCGCCTCCGGTATCTTCACATCAGTCATGAAGCGCTGCGCGAGGTTCTCGATCACGATA 109014 Query 133300 CCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTC 133359 |||||||| | ||||| ||||| ||||||||||||||||| || |||||| |||||| Sbjct 109013 CCGTCGCTTCCTGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGTCGCTCGCCATCGTTC 108954 Query 133360 AAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGAC 133419 | | ||||||| | |||| || ||| || | |||||| || ||||| | | Sbjct 108953 AGCTTCGCCCAGTCCACCATGTCGCTGCCCAGATCGATCTCCTCCACCGTCCAGATGCAG 108894 Query 133420 GCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAAC 133479 ||| | |||||| | | ||| ||||| || || || || || | ||||||| Sbjct 108893 CTCTCTTGCTCCTTGTACTTGCGCCAGATGTCGTGGTACTGGATCGGGAACAGCACAAAC 108834 Query 133480 CGGCGGGGGTTTTC 133493 ||| ||||| || Sbjct 108833 CGGTACGGGTTCTC 108820 >seq4 Length=877237 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || ||||| || ||| | |||| |||||||| | Sbjct 46376 AATGCAGATCTTCGTGAAGACACTGACAGGCAAGACGATCGCGCTCGAGGTCGAGGCGAG 46435 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | | | || | || |||| || || ||||| |||||| | || || Sbjct 46436 CGATACGATCGATAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCGGATCA 46495 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| || | ||||| | |||||||| Sbjct 46496 GCAGCGTCTGATCTTCGCAGGCAAGCAGCTGGAGGAGGGCCGCACATTGGCGGACTACAA 46555 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | ||||| || ||||||||||| || | || ||| Sbjct 46556 TATCCAGAAGGAGTCCACGCTACACCTGGTGCTGCGTCTGCGTGGTGGC 46604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171937201920