Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2 316 3e-81 seq8 161 1e-34 >seq2 Length=1622300 Score = 316 bits (350), Expect = 3e-81 Identities = 854/1294 (66%), Gaps = 23/1294 (2%) Strand=Plus/Plus Query 6868 CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927 ||| |||||||| || ||||| | ||| |||||||| || | | || | || || Sbjct 523 CGTGGAGAAGATCTGGCTCTTCTTGGTTGGGATCGTCGTGTTGCGCTTGATCAGCGACGT 582 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||| | ||| || ||| || | || || | || || |||||||||| || | ||| Sbjct 583 CATGACACCGCCAGCAGTCTCAATGCCGAGTGTGAGCGGGGTCACGTCCAGCAGCAGCAG 642 Query 6988 GTCTTGAACAGATTCGTTCC-CTT--CACCCGTTAAGATGGCGGCTTGGACCGTCGCCCC 7044 | | | | || || | ||| | || || | |||| || || || | ||| || Sbjct 643 ACCCT---CCGTTTGCTTGCTCTTGCCGCCGGTCAGGATGAACGCCTGCACGGCCGCGCC 699 Query 7045 GTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATC 7104 ||| || || ||||| |||||||| || | || ||||| || ||||| ||| | || Sbjct 700 GTACGCAACGGCCTCGTCGGGGTTGATGCTCTTGTTCAGCTCCTTACCACCGAAAAATTC 759 Query 7105 CGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATT 7164 || | || || | || ||||| || || || || ||||| | |||| || | Sbjct 760 GGAGACCAGCGACTGCACCTTGGGGATACGCGTGGAGCCGCCGACGAGCACGACGTCGTG 819 Query 7165 CACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTT 7224 ||| || || ||||| | ||| | || ||||| || || || || Sbjct 820 CACGGCGCGCTTGTCCATCTTCGCGTCCTGCAGAACGCGCTCGACGGGCTCGATGGTCTT 879 Query 7225 ACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATC 7284 ||||| | ||| ||||| ||||| || || |||||||| || | | | ||| || Sbjct 880 GCGGAAGAGGTCGCCGCACAGCTCCTCGAAGCGGGCACGGGTGATAGTCGACTGGAAGTC 939 Query 7285 AACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCG 7344 || || |||| | | || || || ||||| || | || | || || || | || || Sbjct 940 AATGCTGTCGAAGAGCGCGTCGATCTCAATCGTCGCCTGCGTCGCAGAGGACAGGGTGCG 999 Query 7345 CTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATC 7404 ||| || ||||| ||||| || || | ||| || || | ||| || | ||| | || Sbjct 1000 CTTGGCACGCTCGCACGCGGTGCGCAGACGGCGCAGCGACCGCTGGCTCGAGGACAGGTC 1059 Query 7405 TTTCTTATGTTTA---CGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAATC 7458 || | | || || || ||||| || |||| || | ||| | | || Sbjct 1060 CTTGCCACGGTTCTTGCGCTTGAACTCGTCGCTGAAGAAGTTCACCAGGCGGTTG---TC 1116 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 | || |||||||| | ||| || || || ||||| || || || ||||||||||| || Sbjct 1117 AAGGTCCTCACCACCAAGGTGGGTGTCACCGGCGGTGGCCTTCACCTCAAAGATACCGCC 1176 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 ||||| | | || || ||||| ||||| || || || ||||| || ||||| || || Sbjct 1177 GTCAATCGTCAGCAGCGTCACATCGAACGTGCCGCCGCCAAGGTCGAAGATGAGGACATT 1236 Query 7579 CGTATC---GTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || |||| | | |||| || || ||||||||||| || |||||||| || || Sbjct 1237 GTGCTCCTGGTCGCCCGAGCTCTTGTCCAGGCCGTACGCGATGGCAGCCGCCGTCGGCTC 1296 Query 7636 ATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 ||||| || || || || || || |||||||| | | || || ||||| || || | Sbjct 1297 GTTAATGATGCGCAG-CACCTCAAGCCCAGCAATCGCACCGGCGTCCTTCGTAGCCTGCC 1355 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || || ||||| ||||| || |||||||| | || || | | | || | ||| || | Sbjct 1356 GCTGGGAGTCGTTGAAGTACGCGGGGACCGTGATCACGGCCTTCTTCACCTGCTTGCCAA 1415 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 | || || ||||| | || ||||| || || |||||||| ||||| || | || Sbjct 1416 GGTAGGACTCCGCCGTCTCCTTCATCTTCAGCAGCACCATCGAGCTGATCTCCTCCGGCG 1475 Query 7815 CAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874 ||| ||| |||||| || || | |||| || ||||| | | | Sbjct 1476 TGAACATCTTCTCCTCACCGCGGAAGGTCACCTGGATCAGCGGCTTATCGTCCCCCTTCG 1535 Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934 | ||||| ||| ||| | ||||| ||| || ||| ||| ||||||| Sbjct 1536 TCACCACCTTGAACGGCCAGTGCTTCATGTCGAGCTGCACCAACGTGTCACTGAACTTTC 1595 Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994 ||||| || ||||| || || || || || |||| ||||||||||| || |||| Sbjct 1596 GCCCGATCAGGCGCTTCGCGTCGAACACGGTATTTTGCGGGTTCATGGCCACCTGATTCT 1655 Query 7995 TCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCG 8054 |||| || |||||||| || | || | || || || || || || || ||||| |||| Sbjct 1656 TCGCAGCATCCCCGATCAGCC--TC-TCGTTGTCAGTGAAAGCCACATAGGATGGCGTCG 1712 Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114 | || || || || |||||||| || || || ||||| ||||| ||||| ||||| |||| Sbjct 1713 TGCGGTTACCCTGATCGTTCGCGATGATCTCCACGCGCTCGTTCTGCCACACGCCTACGC 1772 Query 8115 ACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 |||| ||||| || || | |||||||| || || Sbjct 1773 ACGAGTACGTCGTGCCCAGGTCAATACCAATGGC 1806 >seq8 Length=550273 Score = 161 bits (178), Expect = 1e-34 Identities = 259/370 (70%), Gaps = 8/370 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || ||||| | ||| || || || ||||| || || || |||| || Sbjct 332554 TCGAAGTCCTCCCCACCGAGGTGGGTGTCACCGGCGGTGGCGACCACCTCGAAGAATCCC 332613 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | | || ||||||||||||||| |||||||| || || || | ||| | Sbjct 332614 TCGTCAATCGTGAGCAGCGAAACATCAAACGTGCCACCACCGAGATCGAAGACGAGAATA 332673 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | ||| | |||||||| | ||||||||||| || |||||||| ||||| Sbjct 332674 TTCTTTTCGCCAACTTTGTTC------AACCCGTACGCGATGGCGGCCGCCGTCGGTTCG 332727 Query 7637 TTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || || || | ||| |||| ||||| || || |||| || || || | ||| || Sbjct 332728 TTGATGATGCGCACCACA-TTCAACCCAGCGATCGTCCCCGCGTCCTTGGTGGATTGCCG 332786 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||| ||||||||||| || ||||||||||| || | | ||| || | |||| Sbjct 332787 CTGGCCATCATTAAAGTAGGCAGGCACCGTTACGACGGCATTCTCGACCTTGGTGCCGAT 332846 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 |||| |||| ||| || ||||| || |||| ||||| ||||| || | || Sbjct 332847 GTACGTCTCCGAGATCTCCTTCATCTTTTGCAGAATCATCGCGCTGATCTCCTCCGGCGT 332906 Query 7816 AAACTGTTTC 7825 ||||| ||| Sbjct 332907 GAACTGCTTC 332916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131704395920