Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq9 114 2e-20 >seq9 Length=527489 Score = 114 bits (126), Expect = 2e-20 Identities = 610/961 (63%), Gaps = 19/961 (2%) Strand=Plus/Minus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| ||||| |||||||| ||||||||| | || || ||| | || |||||| | Sbjct 427548 TTCACTCACGCTACACCAACACTCTTCAACTCCGGGACGCCACGGCCACAAATGAGCTCG 427489 Query 111765 TGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA 111824 ||||| || | || | || |||||| || | ||||| |||| || || | || Sbjct 427488 TGTTTTCTCGTAGCTATGAAAGAGGATAGCATTGAGGGCATCTACGATACACTGAAGGAG 427429 Query 111825 TGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGC- 111883 ||| ||| || | ||||||||| || ||| | || ||||| | || | | Sbjct 427428 ACCGCCGTGATCAGCAAATCGGCTGGTGGGATTGGGCTACATGTCCATAACATCCGCTCG 427369 Query 111884 -CAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTC 111942 | ||| || |||| ||||| |||||| || ||||| | | || ||||| | Sbjct 427368 TCTGGAAG-CTA-TATTGCCGGTACGAATGGTACCTCCAATGGTCTCGTGCCTATGCTGC 427311 Query 111943 GCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTA 111999 | || || ||| ||| || ||||| || | || | ||| | |||||||| | Sbjct 427310 GTGTTTTCAACAACACCGCCCGCTACGTCGATCAGGGTGGCGGCAAGCGCAAGGGCGCCT 427251 Query 112000 TCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCA 112059 | || | || || ||||||||||| || || || | ||||| | | || | | Sbjct 427250 TTGCGATATACCTGGAGCCATGGCATGCTGACATTTTCGAGTTTGTGATGCTGAAGCGTA 427191 Query 112060 ACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGAT 112118 || ||| | ||||| || ||| ||||||||||||| || || |||||||| ||| Sbjct 427190 ACACGGGTAAGGAGGATCAACG-TGCGCGCGATCTCTTCTACGGCCTTTGGATTCCTGAT 427132 Query 112119 CTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCA 112178 ||||| ||| || | || || | | |||| | || | ||| || | Sbjct 427131 CTCTTTATGGAGCGTGTAAAGAATCAGAAAACTTGGACGCTAATGGATCCCTGCACGTGC 427072 Query 112179 CCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGA 112237 || || ||| ||| ||| |||| | || |||||| | | ||| || ||||| || Sbjct 427071 CCGGGACTCAGCGACTGCTATGGG-AAAGATTTTGAACGCTTGTACGAAAGTTACGAAGA 427013 Query 112238 AGAAAGT-CGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGT 112296 | ||| | ||| | || ||| | | ||| || ||||| || ||| | || Sbjct 427012 AAAAAATATGGGGGTACGC-ACGATCCAAGCACAGGAATTGTGGTTTGCCATTTTAGAGA 426954 Query 112297 CTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTA 112356 |||| | ||| || ||| || | ||||| ||||| || || |||||| ||||| | Sbjct 426953 CTCAGATCGAAACGGGTGTTCCGTTCATGCTCTACAAGGATGCGTGTAACAAAAAGTCGA 426894 Query 112357 ATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTA 112416 | || || || | || ||| || | |||||| | || || || || | || | | Sbjct 426893 ACCAGAAACATATTGGCACGATTAAATGCTCCAACTTATGCACTGAGATTATTGAGTACA 426834 Query 112417 CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGG 112476 | | | || || || ||||| ||| | || || |||| || || | ||| Sbjct 426833 CGTCCCCTAACGAAACAGCGGTGTGCAACTTGGCGTCTGTCGCCCTGCCGCGATTTGTAA 426774 Query 112477 ATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAA 112536 | || |||| ||| || | ||| ||| ||||||| |||||| || || Sbjct 426773 ACGTGAAGGAGCAGACCTTTAATCACGAACTTCTCTACGAAGTAACGAAAGAAGTAACCT 426714 Query 112537 AAAACCTAAACAGAGTTATTGATAGAAATTTTTAC---CCCGTTGAGACTGCTCGTAAAT 112593 | ||||| ||| | || || ||| |||| ||| || || |||||||| | | | Sbjct 426713 ACAACCTGAACCGCGTGATCGAT---AATTCCTACTATCCGGTAGAGACTGCAAGGAGAA 426657 Query 112594 CTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTC 112653 ||| | | | || |||||||| | ||||||||||||||||| ||| || |||| Sbjct 426656 GTAACGTAAATTATCGCCCAATTGGAATAGGTGTCCAAGGTCTCGCAGATACTTTTATTC 426597 Query 112654 T 112654 | Sbjct 426596 T 426596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741329219360