Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq16 91.5 2e-13 seq2 91.5 2e-13 seq9 87.8 2e-12 >seq16 Length=341705 Score = 91.5 bits (100), Expect = 2e-13 Identities = 285/433 (66%), Gaps = 29/433 (7%) Strand=Plus/Minus Query 119207 ATAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCAT 119266 ||| || || |||||||| |||||||| ||||||||||| | || ||||| | ||||| Sbjct 109704 ATACTCGCCGACCCTCTTCTCGAAGAAGTTCGTCTTACCCTGCAGCGAGATCATCTCCAT 109645 Query 119267 AAAGTCAAAAGGATTTTTGGAGTTCCAG-ATTGGTGGTTGACCAACTTGTTTCAGAAGAC 119325 |||||||| || ||| | || || || ||| | || ||||| || |||| Sbjct 109644 GAAGTCAAAGGGGTTTGTCGAATTGTAGTATTTCT-CTTCACCAAGCGCAACGAGCAGAC 109586 Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGA-TTA 119384 | || | |||| ||||||| || | |||| ||||| ||||| || || ||| || Sbjct 109585 GGTCCGCGACAAACTCGATGTACTGACCCATCAGCTCCGAGTTCATCCCAATCAGACGTA 109526 Query 119385 CACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGC-TTCTT---------- 119433 | ||| || || ||| |||||| | | |||||| || || || ||| | Sbjct 109525 C-CGGCAGCGCGTCGCAGATGAACTCGTGCTCGATGTCGACCGCATTCGTGATGATCTCC 109467 Query 119434 -TCACGATGGA--GTGAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACT 119490 |||| || | | | || | |||| | || | || |||| | Sbjct 109466 AGCACGCGCGACCGCGGCAACTTGTGCTTGATG--TGGT-------GCGTGTAAAGCAGA 109416 Query 119491 CTACGGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAA 119550 | || ||||| || || | || || ||||| ||||| ||||| ||||||||| | Sbjct 109415 C-AC-GCAAAGTCCGTGTGCAATCCCTCGTCCCGTGAGATCAGCTCGTTACTGAAGGTCA 109358 Query 119551 GTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGA 119610 |||| ||||| | || | ||||| ||||| || | || ||||| || ||||||| Sbjct 109357 GTCCCGGCATCACGCCGCGCTTCTTAAGCCAGAATAGCGCGCAAAACGACCCGGAAAAGA 109298 Query 119611 AGATGCCCTCCAC 119623 ||||||||||||| Sbjct 109297 AGATGCCCTCCAC 109285 >seq2 Length=1622300 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 136706 CACCGTTCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTT 136765 ||| | ||| |||||||||||||||||||||||| || |||| |||||||||| |||| Sbjct 1073913 CACAGCTCTCATAGCTCAGTTGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTT 1073854 Query 136766 CGAGCCCCGTTGGGAACAGCTTTTA 136790 ||| ||| ||||||| || ||||| Sbjct 1073853 CGACCCCTGTTGGGAGCACTTTTTA 1073829 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||||||||||||||||| || |||| |||||||||| ||||||| || Sbjct 1073694 TCTCATAGCTCAGTTGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 1073753 Query 136772 CCGTTGGGAACAGCTTT 136788 | ||||||| || |||| Sbjct 1073754 CTGTTGGGAGCA-CTTT 1073769 >seq9 Length=527489 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||||||||||||||||| || |||| |||||||||| ||||||| || Sbjct 271996 TCTCATAGCTCAGTTGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 272055 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || |||| Sbjct 272056 CTGTTGGGAGCATTTTTT 272073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974984016400