Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq16 136 7e-27 >seq16 Length=341705 Score = 136 bits (150), Expect = 7e-27 Identities = 555/860 (65%), Gaps = 25/860 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || || || ||||| |||||||| ||||| |||| || |||||| |||| Sbjct 109707 CTGATACTCGCCGACCCTCTTCTCGAAGAAGTTCGTCTTACCCTGCAGCGAGATCATCTC 109648 Query 47899 CATGAAGAGGAAGGGGTTGGGTG---TGTTATACACCCGTGTCAGGCCCATCTGTTCCAG 47955 ||||||| |||||||| | | ||| || | | ||| || | | | || Sbjct 109647 CATGAAGTCAAAGGGGTTTGTCGAATTGTAGTATTTCTCT-TCA--CCAAGCGCAACGAG 109591 Query 47956 CAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 ||| | |||||||| |||||||||| | ||| || |||||| || || || Sbjct 109590 CAGACGGTCCGCGACAAACTCGATGTACTGACCCATCAGCTCCGAGTTCATCCCAATCAG 109531 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 || |||| || | || ||||| | ||| || | || || | | | || Sbjct 109530 ACGTACCGGCAGCGCGTCGCAGATGAACTCGTGCTCGATGTCGACCGCATTCGTGATGAT 109471 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGT---TGCGCAGGTGCTTGGCATAGAGCATGCA 48132 || | ||||| ||| | |||| || ||||| || || |||| || Sbjct 109470 CTCCAGCACGCGCGACCGCGGCAACTTGTGCTTGATGTGGTGCGTG---TAAAGCAGACA 109414 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||||||||| ||||||| || |||||||| ||| ||| |||| |||| || || Sbjct 109413 CGCAAAGTCCGTGTGCAATCCCTCGTCCCGTGAGATCAGCTCGTTACTGAAGGTCAGTCC 109354 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAA-GAGCCAGAGAAGAAGA 48251 ||||| || || | || || |||||||| | || || ||| || || || ||||||| Sbjct 109353 CGGCATCACGCCGCGCTTCTTAAGCCAGAATAGCGC-GCAAAACGACCCGGAAAAGAAGA 109295 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 |||||||||| || || ||||| | || | ||| | | ||| || ||| | || Sbjct 109294 TGCCCTCCACCGCTGCAAACGCAATCAGGCGCTC-CTGGAAGCTGC--TCTCGCTCCCGA 109238 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 |||| | ||||| || |||||||||| ||||| || ||||||| || || | | Sbjct 109237 TCCACCGCACGGCCCACTCGGCCTTCTTCTGAATGCAAGGTATCGTCTGGATCGCATGCA 109178 Query 48372 -AGAGCTT--CTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 ||||| ||| |||| | | || | ||| || | |||| || ||| Sbjct 109177 GCAAGCTTACCTT---CTCATCAGGATCGAGGATATACGTGTCCAACAGCACTGAGTAGG 109121 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | |||||| || | ||| ||||| ||||| || | ||||| | Sbjct 109120 TCTCCGAGTGGATATTCTCCATCATCAGCTGAAACCCATAGAACGCACGCGCCTCCGGTA 109061 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 || ||| || || ||| | || | || ||||| | || || || || | | Sbjct 109060 TCTTCACATCAGTCATGAAGCGCTGCGCGAGGTTCTCGATCACGATACCGTCGCTTCCTG 109001 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGC 48608 | ||||||||||| || || || | ||| || |||||| | | | || |||| Sbjct 109000 CGAAGAAGGCAAGCACGTGCTTGATGAAGTGTCGCTCGCCATCGTTCAGCTTCGCCCAGT 108941 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGA-CGCGAGTGCTTTT 48667 || | ||| ||||||| || | || ||||| ||||||| | | | | ||| | Sbjct 108940 CCACCATGTCGCTGCCCAGATCGATCTCCTCCACCGTCCAGATGCAGCTCTCTTGC-TCC 108882 Query 48668 TTGTACATGCCCCATATGTC 48687 |||||| ||| ||| ||||| Sbjct 108881 TTGTACTTGCGCCAGATGTC 108862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531193105920