Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq16 132 9e-26 seq9 84.2 4e-11 >seq16 Length=341705 Score = 132 bits (146), Expect = 9e-26 Identities = 528/819 (64%), Gaps = 21/819 (3%) Strand=Plus/Plus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCC 25569 |||||| | || ||||| ||||||| || ||||||| | |||| | ||| | | Sbjct 108900 CTGGACGGTGGAGGAGATCGATCTGGGCAGCGACATGGTGGACTGGGCGAAGCTGAA--C 108957 Query 25570 AAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATA 25629 | | ||||| || || ||||| ||||| | || ||||| |||| || ||||| Sbjct 108958 GATGGCGAGCGACACTTCATCAAGCACGTGCTTGCCTTCTTCGCAGGAAGCGACGGTATC 109017 Query 25630 GTGAACGAGAATCTGTGCG-AGAGATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGT 25687 |||| |||||| || ||| || | |||| | || ||| || ||| |||||| || Sbjct 109018 GTGATCGAGAACCTC-GCGCAGCGCTTCATGACTGATGTGAAGATACC-GGAGGCGC-GT 109074 Query 25688 GT-TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTT 25746 | ||||| || || ||| || || || ||| | ||||| ||| || | ||| Sbjct 109075 GCGTTCTATGGGTTTCAGCTGATGATGGAGAATATCCACTCGGAGACCTACTCAGTGCTG 109134 Query 25747 CTGATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGG-TGCCATCGAGCA 25805 || ||||| || || | |||| || | ||| || ||| ||| || Sbjct 109135 TTGGACACGTATATCCTCGATCCTGATGAGA-AGGTAAGCTTGCTGCATGCGATCCAGAC 109193 Query 25806 CATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGC 25865 ||||| |||| ||| |||||| ||||||| || ||||||| ||| ||||| Sbjct 109194 GATACCTTGCATTCAGAAGAAGGCCGAGTGGGCCGTGCGGTGGATCGGGAGCGAGAGC-- 109251 Query 25866 TACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTC 25925 | || ||||| ||| | || ||||| || |||||||||||||| || ||| || Sbjct 109252 -AGCTTCCAGGAGCGCCTGATTGCGTTTGCAGCGGTGGAGGGCATCTTCTTTTCCGGGTC 109310 Query 25926 GTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAA 25985 |||| || | |||||||| ||| || || ||||| || ||| ||| || Sbjct 109311 GTTTTGCGCGCTATTCTGGCTTAAGAAGCGCGGCGTGATGCCGGGACTGACCTTCAGTAA 109370 Query 25986 CGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGG 26045 |||||| ||| |||||||||| | |||| || ||||| || ||||| |||||| Sbjct 109371 CGAGCTGATCTCACGGGACGAGGGATTGCACACGGACTTTGCGTGTCTGCTTTACACGCA 109430 Query 26046 CCACTTGCTCCACAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGG 26104 |||| | ||||| | | | ||| || || ||||||| | || || | Sbjct 109431 CCACATCAAGCACAAGTTGCCGCGGTCGCGCGTGCTGGAG-ATCATCACGAATGCGGTCG 109489 Query 26105 AGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACA 26164 | |||||| | ||||| | || |||||| | Sbjct 109490 ACATCGAGCACGAGTTCATCTGCGACGCGCTGCCGGTACGTCTGATTGGGATGAAC-TCG 109548 Query 26165 GA-CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACT 26222 || || ||| | || ||||| |||| ||| || |||| |||||| || | ||| || Sbjct 109549 GAGCTGATGGGTCAGTACATCGAGTTTGTCGCGGACCGTCTGCTCGTTGC-GCTTGGTGA 109607 Query 26223 CGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282 | | | ||||| | || | ||||| || ||||| ||||| | || ||| || | || Sbjct 109608 AGAGAAATACTACAATTCGACAAACCCCTTTGACTTCATGGAGATGATCTCGCTGCAGGG 109667 Query 26283 GAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||| |||||||| || |||||||||||||| ||||| Sbjct 109668 TAAGACGAACTTCTTCGAGAAGAGGGTCGGCGAGTATCA 109706 >seq9 Length=527489 Score = 84.2 bits (92), Expect = 4e-11 Identities = 125/176 (71%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 222026 TCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTC 222085 ||||| || | || ||| ||||| || || ||||| || | | |||||||| | | Sbjct 427110 TCTTT-ACACGCTCCATAAAGAGATCAGGAATCCAAAGGCCGTAGAAGAGATCGCGCGCA 427168 Query 222086 CGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGC 222145 || || |||||| || |||| | |||| || |||||| ||||||||||| ||| Sbjct 427169 CGTTGATCCTCCTTACCCGTGTTACGCTTCAGCATCACAAACTCGAAAATGTCAGCATGC 427228 Query 222146 CACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 || |||||||| || | || | ||||| |||||| |||||||||||| || Sbjct 427229 CATGGCTCCAGGTATATCGCAAAGGCGCCCTTGCGCTTGCCGCCACCCTGATCGAC 427284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843197742720