Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2 331 1e-85 seq8 102 1e-16 >seq2 Length=1622300 Score = 331 bits (366), Expect = 1e-85 Identities = 1011/1555 (65%), Gaps = 16/1555 (1%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || |||||||| || | || || || ||||| || || || || ||||| || || || Sbjct 1806 GCCATTGGTATTGACCTGGGCACGACGTACTCGTGCGTAGGCGTGTGGCAGAACGAGCGC 1747 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| |||| || || || ||||| || || ||||| || || || || || Sbjct 1746 GTGGAGATCATCGCGAACGATCAGGGTAACCGCACGACGCCATCCTATGTGGCTTTCACT 1687 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || || || | || | || ||||| || || |||||| || |||||||| ||| Sbjct 1686 GACAACGAGAGGCTGATCGGGGATGCTGCGAAGAATCAGGTGGCCATGAACCCGCAAAAT 1627 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || || ||||||||||| || || || || ||||| || | | || || | Sbjct 1626 ACCGTGTTCGACGCGAAGCGCCTGATCGGGCGAAAGTTCAGTGACACGTTGGTGCAGCTC 1567 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCG-GTGTGGCTGATAAGCCTATGATTAA 195597 || || ||| ||||| | | | ||| || | || | || |||||||| |||| | Sbjct 1566 GACATGAAGCACTGGCCGT-TCAAGGTGGTGACGAAGGGGGACGATAAGCCGCTGATCCA 1508 Query 195598 TGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTT 195657 || || | ||||||| |||| || | || || || || || |||||| | Sbjct 1507 GGTGACCTTCCGCGGTGAGGAGAAGATGTTCACGCCGGAGGAGATCAGCTCGATGGTGCT 1448 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | | |||||||||||||| ||||| || | | | || || ||||| | || || | Sbjct 1447 GCTGAAGATGAAGGAGACGGCGGAGTCCTACCTTGGCAAGCAGGTGAAGAAGGCCGTGAT 1388 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 || || || || ||||||| || || || || ||||| || |||||||| | ||| || Sbjct 1387 CACGGTCCCCGCGTACTTCAACGACTCCCAGCGGCAGGCTACGAAGGACGCCGGTGCGAT 1328 Query 195778 TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 ||| || || | || | || || || || || || |||||||| || || || || Sbjct 1327 TGCTGGGCTTGAGGTGCTGCGCATCATTAACGAGCCGACGGCGGCTGCCATCGCGTACGG 1268 Query 195838 TCTGGACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894 |||||||||| | | ||| | || | ||||| | ||||| || || || || || Sbjct 1267 CCTGGACAAGAGCTCGGGCGACCAGGAGCACAATGTCCTCATCTTCGACCTTGGCGGCGG 1208 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 ||||| ||||| | || || | ||||| || ||||| || || || ||||| || || Sbjct 1207 CACGTTCGATGTGACGCTGCTGACGATTGACGGCGGTATCTTTGAGGTGAAGGCCACCGC 1148 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCT--TCTCCGTCATTTGTCT 196012 ||||| || || || |||||||| || | || || || | | || || Sbjct 1147 CGGTGACACCCACCTTGGTGGTGAGGACCTTGACAACCGCCTGGTGAACTTC--TTCAGC 1090 Query 196013 GATGAGTTCCGTCGAAAGAA---TAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGT 196069 || |||||| || ||||| | || || | || | | || | || || Sbjct 1089 GACGAGTTCAAGCGCAAGAACCGTGGCAAGGACCTGTCCTCGAGCCAGCGGTCGCTGCGC 1030 Query 196070 CGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATG 196129 || || | || || || || |||||||| || || || || ||| || | || | | | Sbjct 1029 CGTCTGCGCACCGCGTGCGAGCGTGCCAAGCGCACCCTGTCCTCTGCGACGCAGGCGACG 970 Query 196130 GTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGT 196189 ||||||| || || | || ||| | ||||||||| | | ||||| |||||||| || Sbjct 969 ATTGAGATCGACGCGCTCTTCGACAGCATTGACTTCCAGTCGACTATCACCCGTGCCCGC 910 Query 196190 TTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTT 196249 || || ||| | | || | || | ||| || || || || || | || || Sbjct 909 TTCGAGGAGCTGTGCGGCGACCTCTTCCGCAAGACCATCGAGCCCGTCGAGCGCGTTCTG 850 Query 196250 CGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACC 196309 | ||||| |||||||| ||| || | || | || || || || || || || Sbjct 849 CAGGACGCGAAGATGGACAAGCGCGCCGTGCACGACGTCGTGCTCGTCGGCGGCTCCACG 790 Query 196310 CGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAA 196369 ||||| || ||| | || | || | || || ||| | ||| || | ||||| Sbjct 789 CGTATCCCCAAGGTGCAGTCGCTGGTCTCCGAATTTTTCGGTGGTAAGGAGCTGAACAAG 730 Query 196370 ACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCA 196429 | |||||||| || || || ||||| || || |||||||| ||||| || || | Sbjct 729 AGCATCAACCCCGACGAGGCCGTTGCGTACGGCGCGGCCGTGCAGGCGTTCATCCTGACC 670 Query 196430 GGTGTTGACAATAA--TAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCC 196487 || | | | || |||| | | ||| ||||| || || || | || | | | Sbjct 669 GGCGGCAAGAGCAAGCAAACG--GAGGGTCTGCTGCTGCTGGACGTGACCCCGCTCACAC 612 Query 196488 TGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTC 196547 | || |||| || || || ||||| ||||| | || | | ||||| || || | Sbjct 611 TCGGCATTGAGACTGCTGGCGGTGTCATGACGTCGCTGATCAAGCGCAACACGACGATCC 552 Query 196548 CGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTC 196607 | || |||||| || |||| || ||||| || || || || || || || || || | Sbjct 551 CAACCAAGAAGAGCCAGATCTTCTCCACGTACTCGGACAACCAGCCCGGCGTGCACATCC 492 Query 196608 AAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATT 196667 | || | || || || ||| || | ||||| ||| || || || || ||||| Sbjct 491 AGGTCTTCGAGGGCGAGCGCGCCATGACCAAGGACTGCCACCTGCTCGGCACCTTCGACC 432 Query 196668 TGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAG 196727 | | || || || | || || | ||||| || |||||| | || ||||||| | | Sbjct 431 TCTCCGGCATCCCCCCGGCGCCGCGCGGTGTGCCCCAGATTGAGGTCACCTTCGATCTTG 372 Query 196728 ACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGA 196787 |||| || || || || ||||| || || ||||| |||| ||||||| | ||| Sbjct 371 ACGCCAACGGTATCCTGAACGTGACGGCCGAGGAGAAGGGCACTGGCAAGCGCAACCAGA 312 Query 196788 TTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGT 196842 | || || || |||||||| || || ||| ||| || || || ||||| Sbjct 311 TCACCATCACGAACGACAAGGGCCGCCTGAGCAAGTCGGAGATCGAGCGGATGGT 257 >seq8 Length=550273 Score = 102 bits (112), Expect = 1e-16 Identities = 222/327 (68%), Gaps = 8/327 (2%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||||| |||| | | ||| || | | || | |||| || || || Sbjct 332873 AAGATGAAGGAGATCTCGGAGACGTACATCGGCACCAAGGTCGAGAATGCCGTCGTAACG 332814 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || ||||| ||||| | |||| || || || | || |||||||| | | || || Sbjct 332813 GTGCCTGCCTACTTTAATGATGGCCAGCGGCAATCCACCAAGGACGCGGGGACGATCGCT 332754 Query 195782 GGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 || | || ||| | | || ||||| ||||| || ||||| || || || || || | Sbjct 332753 GGGTTGAA-TGTGGTGCGCATCATCAACGAACCGACGGCGGCCGCCATCGCGTACGGGTT 332695 Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 | |||| | || |||| || ||| | | |||| |||||||||||||| ||||| Sbjct 332694 GAACAA--AGTTGG-CGAA---AAGAATATTCTCGTCTTCGATCTCGGTGGTGGCACGTT 332641 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 |||||| || || |||| ||||| | || | ||||| || || || || ||||| Sbjct 332640 TGATGTTTCGCTGCTCACGATTGACGAGGGATTCTTCGAGGTGGTCGCCACCGCCGGTGA 332581 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGA 195987 || || || ||||| || || ||||| Sbjct 332580 CACCCACCTCGGTGGGGAGGACTTCGA 332554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861265187360