Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9 183 9e-41 >seq9 Length=527489 Score = 183 bits (202), Expect = 9e-41 Identities = 500/754 (66%), Gaps = 15/754 (2%) Strand=Plus/Plus Query 155591 AGACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCTACAATCTCACAGC 155649 |||||||| || || ||||| || || || | | || |||| || | ||||||| || Sbjct 426796 AGACGCCAAGTTGCACACCGCTGTTTCGTTAGGGGACG-TGTACTCAATAATCTCAGTGC 426854 Query 155650 ACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCAT 155709 | | ||| || | || || ||||| | || |||||||| || || ||||||| |||| Sbjct 426855 ATAAGTTGGAGCATTTAATCGTGCCAATATGTTTCTGGTTCGACTTTTTGTTACACGCAT 426914 Query 155710 CCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGA 155769 ||||||| || ||| | || || || || ||||| | || | ||| | ||| | Sbjct 426915 CCTTGTAGAGCATGAACGGAACACCCGTTTCGATCTGAGTCTCTAAAATGGCAAACCACA 426974 Query 155770 GGTCACGGGCATTAATT-TGCTTGTTGT-ATCTGCCTTCCGACTCATATTTCATATACAG 155827 || | || | || ||| | || | || | | | |||| || | || Sbjct 426975 ATTCCTGTGCTTGGATCGTGCGTACCCCCATATTTTTTTCTTCGTAACTTTCGTACA-AG 427033 Query 155828 CGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAG 155887 ||||| |||| | || || || || || ||||| |||||| | ||| | || Sbjct 427034 CGTTCAA-AATCTTTCCCATAGCAGTCGCTGAGTCCCGGGCACGTGCAGGGATCCATTAG 427092 Query 155888 CGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATA 155947 || |||| |||| | | |||||||||||||||| | |||| ||||| | || Sbjct 427093 CGTCCAAGTTTTCTGATTCTTTACACGCTCCATAAAGAGATCAGGAATCCAAAGGCCGTA 427152 Query 155948 GAAAAGGTCCCTTGC-CTTTGA--CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAA 156004 ||| || || | || | |||| ||||| | | || | |||| | | | | || Sbjct 427153 GAAGAGATCGCGCGCACGTTGATCCTCCTTACCCGTGTTACGCTTCAGCATCACAAAC-- 427210 Query 156005 TTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC 156064 || ||| |||| ||| ||||||||| || || ||||| || || | |||||| Sbjct 427211 -TCGAAAATGTCAGCATGCCATGGCTCCAGGTATATCGCAAAGGCGCCCTTGCGCTTGCC 427269 Query 156065 ---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACC 156121 ||||||||| || || || || || || ||||| |||| |||||||| | | ||| Sbjct 427270 GCCACCCTGATCGACGTAGCGGGCGGTGTTGTTGAAAACACGCAGCATAGGCACGAGACC 427329 Query 156122 ATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATG 156181 |||||| || ||||| || ||| ||||| ||||| ||||| | ||||| | ||| Sbjct 427330 ATTGGAGGTACCATTCGTACCGGCAATATAGCTTCCAGACGAGCGGATGTTATGGACATG 427389 Query 156182 TAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAAT 156241 ||| ||||| ||||| | | |||| || ||| ||||| | |||| | | || Sbjct 427390 TAGCCCAATCCCACCAGCCGATTTGCTGATCACGGCGGTCTCCTTCAGTGTATCGTAGAT 427449 Query 156242 ACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGG 156301 || ||||| ||| |||| ||| | || ||| | ||||| || | ||| || ||||| Sbjct 427450 GCCCTCAATGCTATCCTCTTTCATAGCTACGAGAAAACACGAGCTCATTTGTGGCCGTGG 427509 Query 156302 TGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335 || || | |||||| ||||| ||||| || ||| Sbjct 427510 CGTCCCGGAGTTGAAGAGTGTTGGTGTAGCGTGA 427543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814997642506