Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq16 147 3e-29 seq9 96.9 4e-14 >seq16 Length=341705 Score = 147 bits (162), Expect = 3e-29 Identities = 223/313 (71%), Gaps = 7/313 (2%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 |||||||| || | | |||||| ||||| ||||| |||| |||||||||| |||||| Sbjct 109703 TACTCGCCGACCCTCTTCTCGAAGAAGTTCGTCTTACCCTGCAGCGAGATCATCTCCATG 109644 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 | || ||||| | || ||||||| || || || |||| ||||||| ||| Sbjct 109643 AAGTCAAAGGGGTTTGTCGAATTGTAGTATTTCTCTTCACCAAGCGCAACGAGCAGACGG 109584 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 || |||||||||||||||||||| | ||| || | | |||||| || || || ||| Sbjct 109583 TCCGCGACAAACTCGATGTACTGACCCATCAGCTCCGAGTTCATCCCAATCAGACGTACC 109524 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTG 868939 ||||||| |||| | ||||| | |||||| ||||| || | |||||||| || | Sbjct 109523 GGCAGCGCGTCGCAGATGAACTCGTGCTCGATGTCGACCGCATTCGTGATGATCT-CCAG 109465 Query 868940 GGCACGTCGGCCGAGG--GCTTG---TTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGT 868994 | || || ||| || |||| |||| | | |||||| ||||| || ||||||| Sbjct 109464 CACGCG-CGACCGCGGCAACTTGTGCTTGATGTGGTGCGTGTAAAGCAGACACGCAAAGT 109406 Query 868995 CGCAGTGCAACCC 869007 | |||||| || Sbjct 109405 CCGTGTGCAATCC 109393 Score = 127 bits (140), Expect = 2e-23 Identities = 207/298 (69%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||| ||||| || | ||| || || || || || | | |||| | | | Sbjct 109117 CCGAGTGGATATTCTCCATCATCAGCTGAAACCCATAGAACGCACGCGCCTCCGGTATCT 109058 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 || || ||||||| || || ||||||||| |||||| |||||||| | |||| Sbjct 109057 TCACATCAGTCATGAAGCGCTGCGCGAGGTTCTCGATCACGATACCGTCGCTTCCTGCGA 108998 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || ||||||||||| ||||| |||||| | ||| | ||| | |||||| | Sbjct 108997 AGAAGGCAAGCACGTGCTTGATGAAGTGTCGCTCGCCATCGTTCAGCTTCGCCCAGTCCA 108938 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | ||||| || || || | |||||| | |||||||| || ||| || |||| Sbjct 108937 CCATGTCGCTGCCCAGATCGATCTCCTCCACCGTCCAGATGCAGCTCTCTTGCTCCTTGT 108878 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 || | ||| | | ||||| |||| ||||| || ||||| |||| ||||| || Sbjct 108877 ACTTGCGCCAGATGTCGTGGTACTGGATCGGGAACAGCACAAACCGGTACGGGTTCTC 108820 Score = 87.8 bits (96), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| | || ||||| || ||||| ||||| || |||| || || ||||| | |||| Sbjct 109400 TGCAATCCCTCGTCCCGTGAGATCAGCTCGTTACTGAAGGTCAGTCCCGGCATCACGCCG 109341 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAA-AAGATGCCCTCGACGGC 869292 |||||||| ||||| || | ||||| |||| |||| ||| ||||||||||| || || Sbjct 109340 CGCTTCTTAAGCCAGAATAGCGCGCA-AAACGACCCGGAAAAGAAGATGCCCTCCACCGC 109282 Query 869293 GGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCAT 869352 ||||| | || || ||||| ||| | || ||| | ||||||| || Sbjct 109281 TGCAAACGCAATCAGGCGCTCCTGGAAGCT------GCTCTCGCTCCCGATCCACCGCAC 109228 Query 869353 CGCCCAGTCGGCCTTTTTC 869371 ||||| |||||||| ||| Sbjct 109227 GGCCCACTCGGCCTTCTTC 109209 >seq9 Length=527489 Score = 96.9 bits (106), Expect = 4e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||||||||| ||| |||| || |||| ||||| |||||||| || | |||||||| Sbjct 427123 CATAAAGAGATCAGGAATCCAAAGGCCGTAGAAGAGATCGCGCGCACGTTGATCCTCCTT 427182 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 || ||| || || | | |||| |||||| || ||||| ||||||||||| Sbjct 427183 ACCCGTGTTACGCTTCAGCATCACAAACTCGAAAATGTCAGCATGCCATGGCTCCAGGTA 427242 Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 |||||||||||||||||||||||||| || Sbjct 427243 TATCGCAAAGGCGCCCTTGCGCTTGCCGCCACC 427275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107127875073746