Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq16 132 8e-25 seq57 100 5e-15 seq9 96.9 5e-14 seq2 91.5 2e-12 seq24 86.0 1e-10 >seq16 Length=341705 Score = 132 bits (146), Expect = 8e-25 Identities = 180/251 (72%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| |||| | || || |||||||||| || |||||||| |||||| ||| Sbjct 109070 GCCTCCGGTATCTTCACATCAGTCATGAAGCGCTGCGCGAGGTTCTCGATCACGATACCG 109011 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||||| | ||||| ||||| || ||||||||||| ||||| |||||| | ||| | ||| Sbjct 109010 TCGCTTCCTGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGTCGCTCGCCATCGTTCAGC 108951 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||||| ||| ||||| ||| || |||| |||||| | ||||| | | || | Sbjct 108950 TTCGCCCAGTCCACCATGTCGCTGCCCAGATCGATCTCCTCCACCGTCCAGATGCAGCTC 108891 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || ||||| |||| |||||||| ||||| || Sbjct 108890 TCTTGCTCCTTGTACTTGCGCCAGATGTCGTGGTACTGGATCGGGAACAGCACAAACCGG 108831 Query 796390 TTGGGGTTCTC 796400 | |||||||| Sbjct 108830 TACGGGTTCTC 108820 >seq57 Length=63030 Score = 100 bits (110), Expect = 5e-15 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||| ||||||||||||||||| | | ||||||| |||| || || || | | | | Sbjct 10454 TTGGAAACGGCCTTGGTACCCTCCGCCATGGCGTGCTTGGCGAGCTCCGCGGGGAGCACC 10395 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 || || || || ||||| | |||||||| ||| | |||| |||||| ||| || Sbjct 10394 AGACGGACAGCCGTCTGCAGCTCGCGGGCGCCCAGCGTGCGCTTCTTGTTCACCCGCACC 10335 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 | ||||||| || | ||||| |||| |||||||| ||||||||||||| |||| Sbjct 10334 AACGTTGCGGCCTCCGTCGCAATGCGCTCGAAGATGTCGTTCACAAACGAGTTCACGATC 10275 >seq9 Length=527489 Score = 96.9 bits (106), Expect = 5e-14 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 2071877 TCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCA 2071936 |||| |||||||| |||||||||||||| || | |||||||| || ||| |||| Sbjct 427140 TCCAAAGGCCGTAGAAGAGATCGCGCGCACGTTGATCCTCCTTACCCGTGTTACGCTTCA 427199 Query 2071937 GGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 2071996 | | | |||| | ||| || ||||| ||||||||||| ||||||||||||| Sbjct 427200 GCATCACAAACTCGAAAATGTCAGCATGCCATGGCTCCAGGTATATCGCAAAGGCGCCCT 427259 Query 2071997 TGCGCTTGCCGCCGCC 2072012 ||||||||||||| || Sbjct 427260 TGCGCTTGCCGCCACC 427275 >seq2 Length=1622300 Score = 91.5 bits (100), Expect = 2e-12 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||| ||||||||||| || || | | ||||||| |||| || ||| || | | | | Sbjct 264711 TTGGAAACGGCCTTGGTGCCTTCCGCCATGGCGTGCTTGGCGAGCTCGGCGGGGAGCACC 264652 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 || || ||||| ||||| | |||||||| || | ||| |||||| ||| || Sbjct 264651 AGACGGACGGCCGTCTGCAGCTCGCGGGCTCCCAGGGTGCGCTTCTTGTTCACCCGCACC 264592 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 | ||||||| || | ||||| |||| |||||||| ||||||||||||| |||| Sbjct 264591 AACGTTGCGGCCTCCGTCGCAATGCGCTCGAAGATGTCGTTCACAAACGAGTTCACGATC 264532 >seq24 Length=195265 Score = 86.0 bits (94), Expect = 1e-10 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||| ||||||||| || ||||| | | ||||||| |||| || || || | | | | Sbjct 106369 TTGGAGACGGCCTTTGTGCCCTCCGCCATGGCGTGCTTGGCGAGCTCCGCGGGGAGCACC 106310 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 || || ||||| ||||| | ||| |||| || | ||| |||||| ||| || Sbjct 106309 AGACGGACGGCCGTCTGCAGCTCACGGGCTCCCAGGGTGCGCTTCTTGTTCACCCGCACC 106250 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 | ||||||| || | ||||| |||| |||||||| ||||||||||||| |||| Sbjct 106249 AACGTTGCGGCCTCCGTCGCAATGCGCTCGAAGATGTCGTTCACAAACGAGTTCACGATC 106190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916231720310582