Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq16 237 2e-57 seq9 113 4e-20 seq4 109 5e-19 >seq16 Length=341705 Score = 237 bits (262), Expect = 2e-57 Identities = 384/537 (72%), Gaps = 13/537 (2%) Strand=Plus/Minus Query 120355 TACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATA 120414 ||||||||||| | ||||| || ||||| || || |||| || ||| || | | ||| Sbjct 109703 TACTCGCCGACCCTCTTCTCGAAGAAGTTCGTCTTACCCTGCAGCGAGATCATCTCCATG 109644 Query 120415 AACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGG 120474 || || || ||||| ||| || |||||||| | || | | |||||||| ||| Sbjct 109643 AAGTCAAAGGGGTTTGTCGAATTGTAGTATTTCTCTTCACCAAGCGCAACGAGCAGACGG 109584 Query 120475 TCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCA-ACGCCAC 120533 ||||| |||||||| ||||||| | ||| || || |||||| || | || ||| || Sbjct 109583 TCCGCGACAAACTCGATGTACTGACCCATCAGCTCCGAGTTCATCCCAATCAGACGT-AC 109525 Query 120534 CGGCAACGCCGACGT-GAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGA 120592 ||||| ||| | || || ||||| | ||| ||||| ||||| | | ||| || | | Sbjct 109524 CGGCAGCGC-GTCGCAGATGAACTCGTGCTCGATGTCGACCGCATTCGTGATGATCTCCA 109466 Query 120593 GCATAGTGTGGCCG-GGCATCTTGTGTTCGATGCGCGTTCG-GTAGTACAGGCACGCAAA 120650 ||| | | | ||| |||| |||||| | |||| | || || ||| ||| |||||||| Sbjct 109465 GCAC-GCGCGACCGCGGCAACTTGTGCTTGATGTG-GTGCGTGTAAAGCAGACACGCAAA 109408 Query 120651 GTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCAT 120710 ||||||||||| |||||||| || || ||||||||||| || || ||||| || ||||| Sbjct 109407 GTCCGTGTGCAATCCCTCGTCCCGTGAGATCAGCTCGTTACTGAAGGTCAGTCCCGGCAT 109348 Query 120711 GATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCC-GAAAAGAACACGCCCT 120769 | ||| | |||| | |||||| || ||||| | ||| |||||||| | ||||| Sbjct 109347 CACGCCGCGCTTCTTAAGCCAGAATAGCGC-GCAAAACGACCCGGAAAAGAAGATGCCCT 109289 Query 120770 CCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACT 120829 |||| ||||| || | || |||||| || | || ||| ||| |||||||| Sbjct 109288 CCACCGCTGCAAACGCAATCAGGCGCTCCTGGAA-GCTGC--TCTCGCTCCCGATCCACC 109232 Query 120830 TCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCA 120886 || ||||||||||||||| || | | ||| || ||| || || ||| | ||||| Sbjct 109231 GCACGGCCCACTCGGCCTTCTTCTGAATGCAAGGTATCGTCTGGATCGCATGCAGCA 109175 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/190 (71%), Gaps = 9/190 (5%) Strand=Plus/Minus Query 121040 TCACGATACTGTCGGCGGCGGCGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGT 121099 ||||||||| |||| | |||||||| || |||||||||||||| |||||||||||| Sbjct 109021 TCACGATACCGTCGCTTCCTGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGTCGCTCGC 108962 Query 121100 CGTCCGTGAGCTTGTGCGCAAAATCGTCATAGTCCTTGGACAGGTCGACCTCCTCCACCT 121159 | || | ||||| ||| | || | ||| || ||| |||| |||||||||| Sbjct 108961 CATCGTTCAGCTT---CGCCCAGTCCACCATGTCGCTGCCCAGATCGATCTCCTCCACCG 108905 Query 121160 TCCACATGCA---ATCGAGCGCCTGTTTATAAGCCGTCCACAGGTCGTTGTGTTGAATCG 121216 |||| ||||| || || ||| | || || ||| | ||||| || || |||| Sbjct 108904 TCCAGATGCAGCTCTCTTGCTCCT-TGTACTTGC--GCCAGATGTCGTGGTACTGGATCG 108848 Query 121217 GGAACAGTAC 121226 ||||||| || Sbjct 108847 GGAACAGCAC 108838 >seq9 Length=527489 Score = 113 bits (124), Expect = 4e-20 Identities = 294/446 (66%), Gaps = 2/446 (0%) Strand=Plus/Plus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGC-GTAGTCGTGCACCGA 148009 ||||| || |||||||||||||||||||||||| || || || | | ||||| || Sbjct 425912 GTGCGAAGGTAGTACATGCCCGTCTTGAGGCCC-TGTTCCCAGCAGAAAAAGTGCATGGA 425970 Query 148010 CGACATGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCAAT 148069 || ||| | | | || | || || || || | |||||| |||||| || Sbjct 425971 CGTTATGCGGCCAGAGGAAGGACTCTCCATGAAGAGGTTTAGAGACTGGGACTGGTCGAT 426030 Query 148070 GAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGCCGT 148129 | || || |||||| | |||||||| || | ||| | ||||||||| | || Sbjct 426031 GTACTTTCCGCGGTCAACAGCCATTTCGATTATCCGCCGCTGCGAAATCTCCCAGACGGT 426090 Query 148130 CTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGGTG 148189 | |||| ||| ||||| | | ||||| | | || | || | |||||| | Sbjct 426091 CCTGTAGAGCTCCTTGAGGTCCTTCGGAATTTCTTTGACGGATTGAATAGAGCCGTTGAA 426150 Query 148190 CGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCGAT 148249 | || ||||| |||||| || ||| | | | | |||||||||| ||| | Sbjct 426151 AGTAATAATCTCATTGCGAATAGTGTCATTCCACATCCCGCGCTCGATCAGATCACGCAC 426210 Query 148250 CAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCT 148309 ||| || | ||||| || ||||||| ||| || || || ||||| || | || Sbjct 426211 CAGGTATTTGTTCACAACAGGAAACTCTCCGCTTAGAACACGACGCAGGTAAATATTTGA 426270 Query 148310 CGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCAT 148369 ||||| || ||||| |||| ||||||||||| || |||| || | || || ||||| Sbjct 426271 TGTAAAGGGCTCAAAACACTCATTGTTGCCCAAGATTTGCGATGTTGACGCGGTCGGCAT 426330 Query 148370 GTACGCTACCAGCAGCGAGTTGCGCA 148395 | ||| | ||| | |||||||||| Sbjct 426331 GGGCGCCAACAGTAAAGAGTTGCGCA 426356 Score = 105 bits (116), Expect = 6e-18 Identities = 476/737 (65%), Gaps = 43/737 (6%) Strand=Plus/Plus Query 148817 CACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGAT 148876 || ||||| ||| || | |||||||| || || || | |||| ||||||| | || Sbjct 426787 CAGGGCGACAGACGCCAAGTTGCACACCGCTGTTTCGTTAGGGGACGTGTACTCAATAAT 426846 Query 148877 CTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTT 148936 ||| | ||| | ||| |||||| ||| ||| | | || || || ||| |||| Sbjct 426847 CTCAGTGCATAAGTTGGAGCATTTAATCGTGCCAATATGTTTCTGGTTCGACTTTTTGTT 426906 Query 148937 GCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG-- 148994 ||||| |||||||| |||||| |||| | || ||||| | ||| || || | ||| Sbjct 426907 ACACGCATCCTTGTAGAGCATGAACGGAACACCCGTTTCGATCTGAGTCTCTAAAATGGC 426966 Query 148995 AACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCC---------TGC 149045 || | | || ||||| || ||| | |||| ||| || || | Sbjct 426967 AAACCA--CAATTCCTGTGC------TTG--GATCGT-GCGTACCCCCATATTTTTTTCT 427015 Query 149046 TCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCAC 149105 ||||| |||| || || || | | || ||||| ||| ||| || |||||| Sbjct 427016 TCGTAACTTTCGTACAAGCGTTCAAAATCTTTCCCATAGCAGTCGCTGAGTCCCGGGCAC 427075 Query 149106 TTGTGCGGGCA--CATGAGCGACCACACGCCGTCCGCGTAC--ACGCGCTTCATAAACAG 149161 |||| || | ||| |||| ||| | || | | || |||| |||||| || Sbjct 427076 --GTGCAGGGATCCATTAGCGTCCAA--GTTTTCTGATTCTTTACACGCTCCATAAAGAG 427131 Query 149162 ATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGC-CTTGCAGTCTTCGGCGCCCATGT 149220 ||| || | ||| || |||| | ||| |||||||| | | | || || ||| ||| Sbjct 427132 ATCAGGAATCCAAAGGCCGTAGAAGAGATCGCGCGCACGTTGA-TCCTCCTTACCCGTGT 427190 Query 149221 TGCGGCGCAGGTTGAGCACGCT-GAATATGTCCGCGTGCCACGGCTCAATGTACACCGCG 149279 | || ||| | | || || ||| ||||| || ||||| ||||| | ||| | ||| Sbjct 427191 TACGCTTCAGCATCA-CAAACTCGAAAATGTCAGCATGCCATGGCTCCAGGTATATCGCA 427249 Query 149280 AGCGCGCCCTTGCGCTTGCCG---CCCTGGTCGACGTGGCGCACCATGTTGTTAAACACT 149336 | |||||||||||||||||| ||||| ||||||| ||| | ||||||| || || Sbjct 427250 AAGGCGCCCTTGCGCTTGCCGCCACCCTGATCGACGTAGCGGGCGGTGTTGTTGAAAACA 427309 Query 149337 CGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGC 149396 || | |||||| | | ||| ||| || || || ||| | ||| || || | Sbjct 427310 CGCAGCATAGGCACGAGACCATTGGAGGTACCATTCGTACCGGCAATATAGCTTCCAGAC 427369 Query 149397 GCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCA 149455 | || | || || || | | || || || || |||| | || ||| | ||| Sbjct 427370 GAGCGGATGTTATGGACATGTAGCCCAATCCCACCAGCCG-ATTTGCTGATCACGGCG-- 427426 Query 149456 GTCGCC--GAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAG 149513 ||| || || || |||||||||||| ||||| || ||||| | | ||||| Sbjct 427427 GTCTCCTTCAGTGTATCGTAGATGCCCTCAATGCTATCCTCTTTCATAGCTACGAGAAAA 427486 Query 149514 CACGAGCACATTTGCGG 149530 ||||||| |||||| || Sbjct 427487 CACGAGCTCATTTGTGG 427503 >seq4 Length=877237 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGC 133517 |||| |||||||| ||||| |||||||| || ||| ||| ||||| |||||| Sbjct 46579 TGTAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAATGTGCGGCCCTCCTCCAGCTGC 46520 Query 133518 TTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTT 133577 ||||| ||| | || || |||||||| || || || ||||| ||||| || |||||| Sbjct 46519 TTGCCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTC 46460 Query 133578 TGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTC 133637 ||| | | || | ||| ||| | | ||| || |||| | || || ||||| ||| Sbjct 46459 GCCTTCACATTATCGATCGTATCGCTCGCCTCGACCTCGAGCGCGATCGTCTTGCCTGTC 46400 Query 133638 AGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| |||||||| Sbjct 46399 AGTGTCTTCACGAAGATCTGCAT 46377 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| |||||||| || ||| ||| ||||| ||||||||||| Sbjct 46801 GTGGACTCCTTCTGGATATTGTAGTCCGCCAATGTGCGGCCCTCCTCCAGCTGCTTGCCT 46742 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || |||||||| || || || ||||| ||||| || |||||| ||| Sbjct 46741 GCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTCGCCTTC 46682 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||| ||| | | ||| || |||| | || || ||||| ||||| || Sbjct 46681 ACATTATCGATCGTATCGCTCGCCTCGACCTCGAGCGCGATCGTCTTGCCTGTCAGTGTC 46622 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 46621 TTCACGAAGATCTGCATG 46604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419966099120