Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq16 172 5e-38 >seq16 Length=341705 Score = 172 bits (190), Expect = 5e-38 Identities = 372/543 (69%), Gaps = 15/543 (3%) Strand=Plus/Plus Query 46737 TTGCTGAATGCGTTCGAGCACG-TGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAA 46795 |||||| ||||| || || ||| | || ||| ||| || |||||| |||||||| || Sbjct 109174 TTGCTGCATGCGATCCAG-ACGATACCTTGCATTCAGAAGAAGGCCGAGTGGGCCGTGCG 109232 Query 46796 GTGGATCGAGAGCGAGACCGCCACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGA 46855 |||||||| |||||||| | | | || ||||| || | || || || || || Sbjct 109233 GTGGATCGGGAGCGAGAGCAGCTTCCAGG---AGCGCCTGATTGCGTTTGCAGCGGTGGA 109289 Query 46856 AGGCGTGtttttttC-GGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAA 46914 ||| | || ||||| ||| ||||||| || | || | |||| | ||| | | Sbjct 109290 GGGCATCTTCTTTTCCGGGTCGTTTTGC-GCGCTATTCTGGCTTAAGAAGCGCGGCGTGA 109348 Query 46915 TGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACT 46974 ||||||| ||||| |||||||||||| ||||||| || ||||| ||| | |||||||||| Sbjct 109349 TGCCGGGACTGACCTTCAGTAACGAGCTGATCTCACGGGACGAGGGATTGCACACGGACT 109408 Query 46975 TTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGACACG-ATCCTG 47033 |||||||||| ||||| | | | | || | || || | ||| | || | ||| Sbjct 109409 TTGCGTGTCTGCTTTACACGCACCACATCAAGCACAAGTT-GCCGCGGTCGCGCGTGCTG 109467 Query 47034 AGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCCG 47091 || | | | | ||||| |||||| | ||||| | ||||| |||||||| | Sbjct 109468 GAGATCATCACGAATGCGGTCGACATCGAGCACGAGTTCAT--CTGCGACGCGCTGCCGG 109525 Query 47092 T-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGAT 47150 | || | || | || |||||| | || ||| | | || || |||||||| ||||| Sbjct 109526 TACGTC-TGATTGGGATGAACTCGGAGCTGATGGGTCAGTACATCGAGTTTGTCGCGGAC 109584 Query 47151 CGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTTT 47210 |||||| | || ||| || || |||||| | ||| | || || ||||| || Sbjct 109585 CGTCTGCTCGTTGCGCTTGGTGAAGAGAAATACTACAATTCGACAAACCCCTTTGACTTC 109644 Query 47211 ATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTAT 47270 ||| | | || ||||| |||| || || || || |||||||| | ||||| |||||| Sbjct 109645 ATGGAGATGATCTCGCTGCAGGGTAAGACGAACTTCTTCGAGAAGAGGGTCGGCGAGTAT 109704 Query 47271 AAG 47273 || Sbjct 109705 CAG 109707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610377845680