Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq16 194 2e-43 >seq16 Length=341705 Score = 194 bits (214), Expect = 2e-43 Identities = 375/547 (69%), Gaps = 10/547 (2%) Strand=Plus/Plus Query 1455731 GATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTAC 1455790 || |||||| |||| ||||| |||||||| |||| ||||| || ||| | |||| Sbjct 108820 GAGAACCCGTACCGGTTTGTGCTGTTCCCGATCCAGTACCACGACATCTGGCGCAAGTAC 108879 Query 1455791 CAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGT 1455850 || || ||| || | | ||||| | |||||| |||| || ||| ||||| ||| Sbjct 108880 -AAGGAGCAAGAGAGCTGCATCTGGACGGTGGAGGAGATCGATCTGGGCAGCGACATGGT 108938 Query 1455851 CCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTT 1455910 |||||| | ||||| ||| | |||||| || |||||||||||||| || ||| || | Sbjct 108939 GGACTGGGCGAAGCTGAACGATGGCGAGCGACACTTCATCAAGCACGTGCTTGCC-TTCT 108997 Query 1455911 TCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCC 1455970 |||| | ||||| || |||||| ||||||||| || ||||| |||| || || Sbjct 108998 TCGCAGGAAGCGACGGTATCGTGATCGAGAACCTCGCGCAGCGCTTCATGACTGATGTGA 109057 Query 1455971 AATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTG 1456030 | | || ||||| ||| ||| || ||||| ||| | || || || |||||||| | Sbjct 109058 AGATACCGGAGGCGCGTGCGTTCTATGGGTTTCAGCTGATGATGGAGAATATCCACTCGG 109117 Query 1456031 AAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCT 1456090 | |||||||| | ||| | ||||| || || || || | ||||||| | | Sbjct 109118 AGACCTACTCAGTGCTGTTGGACACGTATATCCTCGATCCTGATGAGAAGGTAAGCTTGC 109177 Query 1456091 TTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA 1456150 | | || ||| | ||| | || | | ||| |||||||| ||||| || ||||| Sbjct 109178 TGCATGCGATCCAGACGATACCTTGCATTCAGAAGAAGGCCGAGTGGGCCGTGCGGTGGA 109237 Query 1456151 TCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGG 1456209 || | ||| || ||| ||||| || | | ||||| || || ||||| Sbjct 109238 TCGGGAGCGAGAGC-----AGCTTCCAGGAGCGCCTGATTGCGTTTGCAGCGGTGGAGGG 109292 Query 1456210 CATCTT-TTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGC 1456268 |||||| ||| |||| |||| ||||| | || ||||| |||||||||||| | |||| Sbjct 109293 CATCTTCTTTTCCGGGTCGTTT-TGCGCGCTATTCTGGCTTAAGAAGCGCGGCGTGATGC 109351 Query 1456269 CCGGTCT 1456275 | || || Sbjct 109352 CGGGACT 109358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177797889646356