Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4 109 6e-19 seq16 105 7e-18 >seq4 Length=877237 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || |||| ||| |||||||||||||| ||||| || || |||||||| ||||| | || | Sbjct 46594 AGACGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAATG-TGCG 46536 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| |||||||| || |||| |||||||||||| || || ||||| || Sbjct 46535 GCCCTCCTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCCTC 46476 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | || ||| || || || ||||| | Sbjct 46475 CTTATCCTGGATCTTCGCCTTCACATTATCGATCGTATCGCTCGCCTCGACCTCGAGCGC 46416 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTG 134723 || || || || || | || || ||||| || |||||| | || ||| Sbjct 46415 GATCGTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCATTGTATTCTTG 46367 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| || || | ||| ||||| |||||||| ||||| || || |||||||| ||| Sbjct 46831 CCGCCTCTCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCC 46772 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | || | || || ||||| |||||||| || |||| |||||||||||| || || Sbjct 46771 AATG-TGCGGCCCTCCTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCCGGGGG 46713 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || || || || || || || || | || ||| || || || Sbjct 46712 AATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTATCGATCGTATCGCTCGCCTCGAC 46653 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | || || || || || | || || ||||| || ||||| Sbjct 46652 CTCGAGCGCGATCGTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCAT 46605 >seq16 Length=341705 Score = 105 bits (116), Expect = 7e-18 Identities = 228/336 (68%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 21540 CAAACGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACAG 21599 || ||| ||||| || || || ||||| |||| ||| || | ||||| || | ||| Sbjct 109590 CAGACGGTCCGCGACAAACTCGATGTACTGACCCATCAGCTCCGAGTTCATCCCAATCAG 109531 Query 21600 ATCGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCTTGATCAT 21659 | ||||| ||||| ||| || ||||| | |||||| | ||||| | | |||| || Sbjct 109530 ACGTACCGGCAGCGCGTCGCAGATGAACTCGTGCTCGATGTCGACCGCATTCGTGATGAT 109471 Query 21660 GGCGTGTATTT-CACCGGCGGACAATTTGTCTTGAGGCTCGATGTATTTGTTGTAGTAGA 21718 | | | | | |||| ||| |||| ||| ||||| | |||| | Sbjct 109470 CTCCAGCACGCGCGACCGCGG-CAACTTGT------GCTTGATGTGGTGCGTGTAAAGCA 109418 Query 21719 GACAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGA 21778 |||| ||||| | ||||||||||||||||| || || |||| ||||| ||||| || | Sbjct 109417 GACACGCAAAGTCCGTGTGCAATCCCTCGTCCCGTGAGATCAGCTCGTTACTGAAGGTCA 109358 Query 21779 GACCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCTA-CCGGaaaaa 21837 | || ||||| | || || || |||| | || | | |||||| | | |||||||| Sbjct 109357 GTCCCGGCATCACGCCGCGCTTCTTAAGCCAGAATAGCG-CGCAAAACGACCCGGAAAAG 109299 Query 21838 aaCACGCCCTCCACAATGGCGAACGCCACCATGCGC 21873 || | ||||||||| || ||||| | || |||| Sbjct 109298 AAGATGCCCTCCACCGCTGCAAACGCAATCAGGCGC 109263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397528187760